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remove: findMaxValue, dead code with no real callers and three confirmed bugs Tests #327: Pull request #465 opened by edkerk
1m 54s remove/find-max-value-dead-code
remove/find-max-value-dead-code
1m 54s
fix: makeEcModel's protein usage reactions match the model's subSystems convention Tests #326: Pull request #464 opened by edkerk
2m 1s fix/subsystems-mismatch-crashes-save
fix/subsystems-mismatch-crashes-save
2m 1s
fix: isozyme kcat selection and EC-annotation overwrite bugs Tests #325: Pull request #463 synchronize by edkerk
1m 50s fix/isozyme-kcat-and-ec-overwrite
fix/isozyme-kcat-and-ec-overwrite
1m 50s
docs: audit and clarify all function docstrings Tests #324: Pull request #462 opened by edkerk
2m 20s docs/audit-all-docstrings
docs/audit-all-docstrings
2m 20s
docs: clarify calculateMW and reportEnzymeUsage docstrings Tests #323: Pull request #461 opened by edkerk
2m 29s docs/clarify-calculatemw-and-reportenzymeusage-docstrings
docs/clarify-calculatemw-and-reportenzymeusage-docstrings
2m 29s
fix: reportEnzymeUsage skips only fully-inactive enzymes in topAbsUsage Tests #322: Pull request #460 synchronize by edkerk
1m 58s feat/reconcile-report-enzyme-usage
feat/reconcile-report-enzyme-usage
1m 58s
fix: reportEnzymeUsage skips only fully-inactive enzymes in topAbsUsage Tests #321: Pull request #460 opened by edkerk
2m 19s feat/reconcile-report-enzyme-usage
feat/reconcile-report-enzyme-usage
2m 19s
fix: reconcile calculateMW with geckopy's calculate_mw Tests #320: Pull request #459 opened by edkerk
1m 57s feat/reconcile-calculatemw
feat/reconcile-calculatemw
1m 57s
feat: KEGG fallback for protein info in makeEcModel stage 7 Tests #319: Pull request #458 synchronize by edkerk
3m 17s feat/makeecmodel-kegg-fallback
feat/makeecmodel-kegg-fallback
3m 17s
feat: generalize kcat merging to N sources via mergeKcats Tests #318: Pull request #457 synchronize by edkerk
2m 5s feat/generalize-merge-kcats
feat/generalize-merge-kcats
2m 5s
feat: KEGG fallback for protein info in makeEcModel stage 7 Tests #317: Pull request #458 opened by edkerk
1m 46s feat/makeecmodel-kegg-fallback
feat/makeecmodel-kegg-fallback
1m 46s
feat: generalize kcat merging to N sources via mergeKcats Tests #316: Pull request #457 opened by edkerk
2m 11s feat/generalize-merge-kcats
feat/generalize-merge-kcats
2m 11s
feat: extract downloadKEGG.m and downloadUniProt.m as standalone functions Tests #315: Pull request #456 opened by edkerk
1m 44s feat/download-kegg-uniprot-functions
feat/download-kegg-uniprot-functions
1m 44s
feat: migrate BRENDA data from max_*.txt to kcat/mw/sa.tsv Tests #314: Pull request #455 opened by edkerk
1m 56s feat/brenda-tsv-format
feat/brenda-tsv-format
1m 56s
fix: replace dispEM (removed from RAVEN) with error+ravenList Tests #313: Pull request #454 synchronize by edkerk
2m 14s fix/dispem-removed-from-raven
fix/dispem-removed-from-raven
2m 14s
pages build and deployment pages-build-deployment #33: by edkerk
1m 4s main
main
1m 4s
pages build and deployment pages-build-deployment #32: by edkerk
56s main
main
56s
fix: replace dispEM (removed from RAVEN) with error+ravenList Tests #312: Pull request #454 opened by edkerk
2m 19s fix/dispem-removed-from-raven
fix/dispem-removed-from-raven
2m 19s
fix: case-insensitive DLKcat substrate match, stable ec.genes order, dead code Tests #311: Pull request #452 opened by edkerk
2m 14s fix/small-reproducibility-and-io-bugs
fix/small-reproducibility-and-io-bugs
2m 14s
Update GECKO logo Tests #310: Pull request #447 opened by edkerk
1d 0h 0m 2s update-gecko-logo
update-gecko-logo
1d 0h 0m 2s
fix: four EC-code and kcat data-quality bugs Tests #309: Pull request #446 opened by edkerk
1m 55s fix/ec-kcat-data-quality-bugs
fix/ec-kcat-data-quality-bugs
1m 55s
Add OpenKineticsPredictor REST client (submit/fetch) Tests #308: Pull request #441 opened by edkerk
1m 53s feat/okp-rest-client
feat/okp-rest-client
1m 53s
Add relaxProteomicsGreedy, shadow-price-ordered proteomics relaxation Tests #307: Pull request #440 synchronize by edkerk
2m 2s feat/relax-proteomics-greedy
feat/relax-proteomics-greedy
2m 2s
Add relaxProteomicsGreedy, shadow-price-ordered proteomics relaxation Tests #306: Pull request #440 synchronize by edkerk
1m 45s feat/relax-proteomics-greedy
feat/relax-proteomics-greedy
1m 45s
Add pfbaEnzymes, enzyme-aware parsimonious FBA Tests #305: Pull request #439 synchronize by edkerk
1m 53s feat/pfba-enzymes
feat/pfba-enzymes
1m 53s