Systems and Synthetic Biology at Chalmers University of Technology

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1. Human-GEM Human-GEM Public

   The generic genome-scale metabolic model of Homo sapiens

   MATLAB 171 64

2. yeast-GEM yeast-GEM Public

   The consensus GEM for Saccharomyces cerevisiae

   MATLAB 132 51

3. RAVEN RAVEN Public

   The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

   MATLAB 131 62

4. GECKO GECKO Public

   Toolbox for including enzyme constraints on a genome-scale model.

   MATLAB 91 55

5. DLKcat DLKcat Public

   Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

   Python 200 69