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FIX: Improve segmentation for < 3 months using bibsnet + infantfs - #128

Merged

gagnonanthony merged 27 commits into

scilus:devfrom

gagnonanthony:fix/segmentation_validation

Aug 19, 2026

Merged

FIX: Improve segmentation for < 3 months using bibsnet + infantfs#128
gagnonanthony merged 27 commits into
scilus:devfrom
gagnonanthony:fix/segmentation_validation

Commits on Jul 27, 2026
Commits on Jul 28, 2026
- bump version to latest docker container
  gagnonanthony
  committed
  30e74b3
- remove no longer used modules
  gagnonanthony
  committed
  a81cf22
Commits on Aug 14, 2026
- remove mcribs and related parameters
  gagnonanthony
  committed
  d77b26a
- add new modules for bibsnet and infantfs
  gagnonanthony
  committed
  8a62280
Commits on Aug 15, 2026
- set up configs
  gagnonanthony
  committed
  3742bd4
- update mapping modules from fslr -> fsaverage -> subject
  gagnonanthony
  committed
  0b68e96
- update segmentation subworkflow to use bibsnet and infantfs
  gagnonanthony
  committed
  86c5d11
- integrate changes in main workflow
  gagnonanthony
  committed
  e169ebf
- update snaps
  gagnonanthony
  committed
  3a83322
Commits on Aug 16, 2026
- update templates url + add md5 checks to ensure matching version
  gagnonanthony
  committed
  a53fd41
- fix issues when intendedFor was a string + modify data to test combinations
  gagnonanthony
  committed
  6b05c33
Commits on Aug 17, 2026
- update archive to latest + remove bibsnet dockerfile and typos
  gagnonanthony
  committed
  a918209
Commits on Aug 18, 2026
- update templates version
  gagnonanthony
  committed
  9f1dcc8
- place bibsnet work dir in the process folder
  gagnonanthony
  committed
  42b82df
- add lint ignore for gpu tests
  gagnonanthony
  committed
  de2f80f
- Merge branch 'dev' into fix/segmentation_validation
  gagnonanthony
  authored
  0f72db5
- remvoe duplicated keys
  gagnonanthony
  committed
  ed10745
- bump java mem to 4Gb
  gagnonanthony
  committed
  9043419
- fix how profile is supplied to nf-test
  gagnonanthony
  committed
  b9e764a
- extend bibsnet + infantfs to all subjects < 1 year
  gagnonanthony
  committed
  e28ab2c
- remove MCRIBS related parameters
  gagnonanthony
  committed
  ff098aa
- update methods boilerplate and uniformize age handling
  gagnonanthony
  committed
  0c3f9ae
- update changelog
  gagnonanthony
  committed
  5322d06
Commits on Aug 19, 2026
- bump memory requirements for bibsnet
  gagnonanthony
  committed
  c0c4952

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FIX: Improve segmentation for < 3 months using bibsnet + infantfs - #128

FIX: Improve segmentation for < 3 months using bibsnet + infantfs#128
gagnonanthony merged 27 commits into
scilus:devfrom
gagnonanthony:fix/segmentation_validation

Commits on Jul 27, 2026

fix error on resume, mcribs cortical alignment + segmentation checks

fix for numpy 4D array in mcribs

add check that gpu_type is provided when using gpu profile + test

Commits on Jul 28, 2026

bump version to latest docker container

remove no longer used modules

Commits on Aug 14, 2026

remove mcribs and related parameters

add new modules for bibsnet and infantfs

Commits on Aug 15, 2026

set up configs

update mapping modules from fslr -> fsaverage -> subject

update segmentation subworkflow to use bibsnet and infantfs

integrate changes in main workflow

update snaps

Commits on Aug 16, 2026

update templates url + add md5 checks to ensure matching version

fix issues when intendedFor was a string + modify data to test combinations

Commits on Aug 17, 2026

update archive to latest + remove bibsnet dockerfile and typos

Commits on Aug 18, 2026

update templates version

place bibsnet work dir in the process folder

add lint ignore for gpu tests

Merge branch 'dev' into fix/segmentation_validation

remvoe duplicated keys

bump java mem to 4Gb

fix how profile is supplied to nf-test

extend bibsnet + infantfs to all subjects < 1 year

remove MCRIBS related parameters

update methods boilerplate and uniformize age handling

update changelog

Commits on Aug 19, 2026

bump memory requirements for bibsnet