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FIX: Improve segmentation for < 3 months using bibsnet + infantfs - #128

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gagnonanthony merged 27 commits into
scilus:devfrom
gagnonanthony:fix/segmentation_validation
Aug 19, 2026
Merged

gagnonanthony merged 27 commits into
scilus:devfrom
gagnonanthony:fix/segmentation_validation

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@gagnonanthony gagnonanthony commented Jul 28, 2026 •

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To improve segmentation in younger subjects (<3 months), we switch the MCRIB-S solution to a combination of bibsnet and infant freesurfer. This enables the surfaces to be registered to the usual fsaverage and facilitates mapping from fslr32k to subject space, similar to what is currently done for older subjects. This PR introduces the two new modules and heavy modifications to the segmentation subworkflow.

Linked to doc update here: scilus/sf-pediatric-documentation#16

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@gagnonanthony gagnonanthony self-assigned this Jul 28, 2026
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gagnonanthony commented Jul 28, 2026 •

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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 4.0.3.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@gagnonanthony gagnonanthony changed the title FIX: Improve validation of segmentation + minor fix to M-CRIBS FIX: Improve segmentation for < 3 months using bibsnet + infantfs Aug 18, 2026
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gagnonanthony merged commit 44c48c5 into scilus:dev Aug 19, 2026
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gagnonanthony deleted the fix/segmentation_validation branch August 19, 2026 03:17
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