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Pull requests: nf-core/tools

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Pull requests list

Update GitHub Actions
#4389 opened Jul 9, 2026 by renovate Bot Loading…
1 task
5
Update actions/checkout action to v7
#4388 opened Jul 9, 2026 by renovate Bot Loading…
1 task
2
make CLI startup faster
#4383 opened Jul 7, 2026 by mashehu Contributor Loading…
3
Migrate pipeline lint rules to AST-grep
#4381 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Flag legacy versions emits
#4380 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Flag legacy versions.yml topic outputs
#4379 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Add AST-grep lint foundations
#4377 opened Jul 7, 2026 by edmundmiller Contributor Loading… 4.2.0
1
Modules: add gpu container creation
#4375 opened Jul 6, 2026 by mashehu Contributor • Draft
1
add log hint in modules create and add create containers to modules bump-versions
#4374 opened Jul 6, 2026 by mashehu Contributor Loading… 4.1.0
6
add section about human-to-human communication to AI pollicy
#4371 opened Jul 3, 2026 by mashehu Contributor Loading…
4
Update mcr.microsoft.com/devcontainers/base Docker tag to v2.1.11
#4363 opened Jul 1, 2026 by renovate Bot Loading…
1 task
1
build seqera containers on modules create and modules bump-version
#4362 opened Jun 30, 2026 by mashehu Contributor • Draft
2
Emphasise base.config values SHOULD be adjusted on a per-pipeline basis by developer
#4360 opened Jun 30, 2026 by jfy133 Member Loading…
4 tasks
3
Update pre-commit hooks
#4359 opened Jun 29, 2026 by renovate Bot Loading…
1 task
3
Log subworkflow dependencies on install (#3871)
#4357 opened Jun 28, 2026 by xorrito624 Loading…
7
Update dependency pytest to v9 [SECURITY] security
#4356 opened Jun 27, 2026 by renovate Bot Loading…
1 task
1
Enable Slack notifications on pipeline start for megatests
#4349 opened Jun 25, 2026 by maxulysse Member Loading…
4 tasks
4
fix: allow dots in usernames for non-GitHub git providers awaiting-feedback
#4343 opened Jun 24, 2026 by sanmaxdev Loading…
4 tasks done
8
switch to more secure split PR comment approach
#4342 opened Jun 23, 2026 by mashehu Contributor Loading…
3
test: cover val substring in emit names
#4340 opened Jun 22, 2026 by joeydufourd Loading…
2 of 4 tasks
4
Bump msgpack from 1.1.2 to 1.2.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4339 opened Jun 19, 2026 by dependabot Bot Loading…
1
Bump aiohttp from 3.13.5 to 3.14.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4330 opened Jun 17, 2026 by dependabot Bot Loading…
1
Bump cryptography from 47.0.0 to 48.0.1 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4329 opened Jun 17, 2026 by dependabot Bot Loading…
1
Bump pyjwt from 2.12.1 to 2.13.0 dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#4326 opened Jun 16, 2026 by dependabot Bot Loading…
1
fix: relax stub .gz linting regex to accept echo without arguments
#4323 opened Jun 11, 2026 by handsomesix Loading…
1
1
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