Make available the miltenyi-human-rna-bcr-profiling preset

[julenmendieta]

Confidence Score: 5/5

The PR appears safe to merge; no actionable issues were found.

What we checked:

• Missing settings for a stage: The parent supplies settings for all four selected stages. The child overrides alignment and UMI refinement while retaining assembly and export settings.

Summary

Enables miltenyi-human-rna-bcr-profiling by uncommenting its existing definition. Users can select the Miltenyi Human BCR RNA Profiling Kit preset for alignment, UMI refinement, clone assembly, and export.

Important touched types:

• SetSpecies sets the sample species. The enabled preset selects human (hsa).
• MaterialTypeRNA selects RNA-specific settings. It now applies to this preset.
• SetTagPattern defines how reads contain tags and sequences. The enabled pattern extracts a 14-base UMI and the R1 and R2 sequences.
• SetClonotypeAssemblingFeatures selects the sequence span used to assemble clones. The preset enables {CDR1Begin:FR4End}.
• SetSplitClonesBy keeps clones separate by the selected gene type. The preset enables splitting by C.
• AddExportClonesField adds a field to clone exports. The preset enables -isotype with auto.

No actionable issues were found. Checks were based on source review; no tests were run.

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