Issues

• how to process ONT reads from BD rhapsody single cell vdj full length library?

  milaboratory/mixcr#2164 · Filter by author shengzizhang opened on Oct 7, 2026

• How to designate input FASTQs for parsebio-sc-bcr-evercode — 8 sublibraries split across multiple lanes; is {{a}}_L{{n}} file-pattern matching the intended way?

  milaboratory/mixcr#2159 · Filter by author Khang-LQ opened on Oct 5, 2026
  2

• Error in lane-split samples analysis

  milaboratory/mixcr#2144 · Filter by author kriukovav opened on Sep 23, 2026
  1

• Appropriate preset for single-cell BCR data from SMART-Seq v4 kit (well-sorted, no UMI)?

  milaboratory/mixcr#2130 · Filter by author gsr9999 opened on Aug 20, 2026

• Creating a custom OGRDB+IMGT library, repseqio 1.7 mixcr 4.7 errors

  milaboratory/mixcr#2127 · Filter by author LinaWGL opened on Jul 23, 2026

• why no new releases after 4.7.0 after Aug 7, 2024 ?

  milaboratory/mixcr#2126 · Filter by author gsr9999 opened on Jul 18, 2026
  6

• Running MiXCR on BAM files - GRCh37 vs GRCh38 input

  milaboratory/mixcr#2125 · Filter by author imbertj opened on Jul 17, 2026
  3

• Title: License error: ConnectionError persists even after updating to latest version and re-applying Academic license

  milaboratory/mixcr#2095 · Filter by author zy137849833 opened on Mar 24, 2026
  3

• Error with assembleCells preventing the 10x-sc-xcr-vdj pipeline from compeleting

  milaboratory/mixcr#2083 · Filter by author Khang-LQ opened on Feb 25, 2026
  3

• Low cell count

  milaboratory/mixcr#2082 · Filter by author SirKuikka opened on Feb 23, 2026
  3

• Question about long read paramter

  milaboratory/mixcr#2078 · Filter by author e-antoun opened on Feb 11, 2026
  4

• Inconsistent FinalClonotypes between two sequencing platforms on the same sample

  milaboratory/mixcr#2076 · Filter by author xin-bang opened on Feb 5, 2026
  2

• repseqio updates?

  milaboratory/mixcr#2075 · Filter by author Januaryyiyue opened on Feb 3, 2026
  3

• Why would special letters happen in the results?

  milaboratory/mixcr#2062 · Filter by author linqy-immune opened on Jan 20, 2026
  2

• Error running MiXCR on ONT long read data

  milaboratory/mixcr#2052 · Filter by author e-antoun opened on Jan 7, 2026
  2

• Request for Assistance with 10x 5' V3 VDJ Data Processing in mixcr v4.7.0

  milaboratory/mixcr#2050 · Filter by author Flynn2059 opened on Jan 4, 2026
  1

• Configuring MiXCR for custom Bulk BCR/TCR-seq with structured UMI for full-length VDJ assembly

  milaboratory/mixcr#2047 · Filter by author Yaxiong293 opened on Dec 24, 2025
  3

• Error parsing read "Cannot read field "regions" because "<local6>" is null'" when aligning concatenated single-end amplicon sequences with virtual paired-end input

  milaboratory/mixcr#2046 · Filter by author biomaticss opened on Dec 24, 2025
  5

• exportAlignments -readIds parameter exports numeric index ‘0‘ instead of actual FASTQ read identifiers

  milaboratory/mixcr#2045 · Filter by author biomaticss opened on Dec 19, 2025
  1

• How to associate MiXCR clone results with Cx/Cy coordinates (from BAM tags)?

  milaboratory/mixcr#2041 · Filter by author junpengz67-netizen opened on Dec 11, 2025
  1

• single-cell data analysis - exportAirr

  milaboratory/mixcr#2027 · Filter by author linqy-immune opened on Oct 21, 2025
  10

• error when using extend with clna file

  milaboratory/mixcr#2003 · Filter by author racng opened on Aug 13, 2025

• problem with a specific BCR clone in running preset 10x for single cell

  milaboratory/mixcr#1977 · Filter by author chiarball opened on Jul 9, 2025
  1

• Question about findShmTrees

  milaboratory/mixcr#1971 · Filter by author PpGrApee opened on Jun 24, 2025
  1

• Problem with Custom Library Build java.net.URISyntaxException

  milaboratory/mixcr#1948 · Filter by author DrakarysP53 opened on May 25, 2025
  4