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Pull requests: SysBioChalmers/Human-GEM

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Pull requests list

test: score gene essentiality per task category (replaces all-task binary scoring)
#1077 opened Aug 18, 2026 by edkerk Member Loading…
2 of 3 tasks
3
Fix metabolicTasks_Full.txt so it parses with parseTaskList
#1070 opened Jul 18, 2026 by edkerk Member Loading… 2.1.0
1
feat: add human_gem Python package with load_model()
#1069 opened Jul 17, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
chore: remove legacy getINITModel2 gene-essentiality code
#1068 opened Jul 17, 2026 by edkerk Member • 2/2 Loading…
2 of 3 tasks
2.1.0
1
Human 2.0.1
#1061 opened Jul 15, 2026 by edkerk Member • 1/2 Loading…
2 of 3 tasks
2
feat: add (S)-dihydroorotate transport and exchange reactions
#1047 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
fix: correct 4-hydroxy-13-cis-retinoate (misnamed 4-oxo) and merge duplicate
#1044 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
feat: enable collagen secretion and remove duplicate MAR09553
#1043 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
fix: correct mechanism and stoichiometry of duplicate transport reactions
#1041 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
fix: remove charge-imbalanced duplicate lipoxygenase reactions (#348)
#1040 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
feat: add cellular succinate export via MCT proton symport
#1039 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
fix: remove LDHAL6A from MAR11479 for GPR consistency with MAR11476
#1038 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
feat: associate voltage-gated and store-operated Ca2+ channels with MAR11311
#1033 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
fix: reformulate SAM synthesis GPR and remove non-catalytic MAT2B
#1030 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
1
fix: couple non-ETF flavoenzymes directly to ubiquinone
#1028 opened Jul 11, 2026 by edkerk Member Loading…
2 of 3 tasks
2.1.0
3
Fix: Update Mitochondrial reaction reversibility and localization
#1011 opened Feb 6, 2026 by hchapman1 Collaborator Loading…
3 tasks done
1
Fix duplicate metabolites identified by MetaNetX IDs
#653 opened Jun 20, 2023 by JHL-452b Collaborator • Draft
3 tasks done
6
ProTip! What’s not been updated in a month: updated:<2026-07-19.