Issues

• Can it be used to predict the structure of single-stranded RNA only?

  uw-ipd/RoseTTAFold2NA#127 · Filter by author nolanjj opened on Oct 2, 2025

• Issues with Downloading and Extracting Large Database Files — EOF Errors and Corrupted Files

  uw-ipd/RoseTTAFold2NA#126 · Filter by author wcq427 opened on Jul 26, 2025

• Database and DNA length questions for protein-DNA prediction

  uw-ipd/RoseTTAFold2NA#125 · Filter by author wcq427 opened on Jul 24, 2025

• Bug Report: hhfilter Error "No sequences found" during MSA Generation

  uw-ipd/RoseTTAFold2NA#124 · Filter by author vas2201 opened on Apr 26, 2025

• G-quadruplex (G4) DNA

  uw-ipd/RoseTTAFold2NA#123 · Filter by author ZhuLvs opened on Nov 15, 2024

• makeblastdb error

  uw-ipd/RoseTTAFold2NA#122 · Filter by author eliaswip opened on Oct 7, 2024
  1

• How the weight file is generated, and whether the code has been open-sourced

  uw-ipd/RoseTTAFold2NA#121 · Filter by author 124189 opened on Sep 26, 2024

• RNA Secondary Structure

  uw-ipd/RoseTTAFold2NA#120 · Filter by author iammarcol opened on Sep 16, 2024
  1

• hardware requirements

  uw-ipd/RoseTTAFold2NA#119 · Filter by author kaw97 opened on Sep 12, 2024
  3

• Is the training dataset exclusive and is it available？

  uw-ipd/RoseTTAFold2NA#118 · Filter by author 124189 opened on Aug 24, 2024

• Antibody structure prediction

  uw-ipd/RoseTTAFold2NA#117 · Filter by author vella12-osu opened on Aug 6, 2024
  1

• Unaccepted characters after Rfam-database-check

  uw-ipd/RoseTTAFold2NA#116 · Filter by author Tim15-tech opened on Jul 16, 2024
  4

• dimaio/new_config: Conda environment needs to be activated

  uw-ipd/RoseTTAFold2NA#112 · Filter by author SuhasSrinivasan opened on Apr 30, 2024

• A SOLUTION for Package Dependency Issues 📦

  uw-ipd/RoseTTAFold2NA#105 · Filter by author SuhasSrinivasan opened on Apr 17, 2024
  2

• Downloading pre-trained weights

  uw-ipd/RoseTTAFold2NA#102 · Filter by author kiernan1 opened on Apr 11, 2024

• About whether RoseTTAFold2NA can generate multiple models?

  uw-ipd/RoseTTAFold2NA#101 · Filter by author April-Zhangjq opened on Apr 9, 2024

• Error: (803.7) [makeblastdb] Blast-def-line-set.E.title

  uw-ipd/RoseTTAFold2NA#98 · Filter by author William-chen777 opened on Apr 2, 2024
  3

• Please provide pre-processed files for RNA

  uw-ipd/RoseTTAFold2NA#97 · Filter by author SuhasSrinivasan opened on Apr 1, 2024

• Can RoseTTAFold2NA predict the complex of several protein chains with DNA?

  uw-ipd/RoseTTAFold2NA#95 · Filter by author BelyaevaJuly opened on Mar 25, 2024

• How to solve error : PackagesNotFoundError: The following packages are not available from current channels

  uw-ipd/RoseTTAFold2NA#94 · Filter by author yunsangk opened on Mar 21, 2024
  1

• ../input_prep/reprocess_rnac.pl id_mapping.tsv.gz rfam_annotations.tsv.gz # ~8 minutes

  uw-ipd/RoseTTAFold2NA#92 · Filter by author rse-lbl opened on Mar 10, 2024
  3

• Test run_no output model

  uw-ipd/RoseTTAFold2NA#91 · Filter by author hummmmv opened on Mar 6, 2024
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• Discrepancy in Size of nt Dataset Downloads: Direct Link vs. update_blastdb.pl Command

  uw-ipd/RoseTTAFold2NA#90 · Filter by author ShuZishan opened on Feb 22, 2024
  4

• Does RoseTTAFold2NA model the phosphorylated amino acids?

  uw-ipd/RoseTTAFold2NA#89 · Filter by author Wenhao-Jin opened on Jan 31, 2024

• makeblastdb errors when generating RNA data base

  uw-ipd/RoseTTAFold2NA#88 · Filter by author vcojocaru opened on Jan 31, 2024
  2