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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 59 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 11 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 13 2

  4. orcabus orcabus Public

    OrcaBus is expanding to https://github.com/orcabus

    Python 5

  5. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 15 8

Repositories

Showing 10 of 141 repositories
  • wrapica Public

    A suite of secondary / tertiary functions for running ICA API calls

    umccr/wrapica's past year of commit activity
    Python 2 GPL-3.0 0 7 1 Updated Oct 28, 2026
  • docs-platform Public

    Infrastructure and tooling for the UMCCR internal documentation platform at docs.umccr.org.

    umccr/docs-platform's past year of commit activity
    TypeScript 0 0 0 0 Updated Oct 28, 2026
  • orcanexus Public

    OrcaNexus Data API

    umccr/orcanexus's past year of commit activity
    Java 0 0 0 0 Updated Oct 28, 2026
  • orcahouse Public

    🐳 UMCCR Pipeline & Workflow Data Warehouse

    umccr/orcahouse's past year of commit activity
    HCL 0 0 0 2 Updated Oct 27, 2026
  • orcaglue Public

    OrcaGlue - Frontline ETL for Pipeline Automation Data Warehouse

    umccr/orcaglue's past year of commit activity
    Python 0 0 0 1 Updated Oct 27, 2026
  • nf-ica Public

    Configurations and patches used to deploy nextflow pipelines onto ICAv2.

    umccr/nf-ica's past year of commit activity
    0 GPL-3.0 0 0 0 Updated Oct 27, 2026
  • orcasonar Public
    umccr/orcasonar's past year of commit activity
    TypeScript 0 MIT 0 1 0 Updated Oct 27, 2026
  • orcahouse-ui Public

    The UI for the OrcaHouse project.

    umccr/orcahouse-ui's past year of commit activity
    TypeScript 0 MIT 0 0 1 Updated Oct 27, 2026
  • sash Public

    UMCCR post-processing WGS workflow

    umccr/sash's past year of commit activity
    Nextflow 2 MIT 0 4 6 Updated Oct 27, 2026
  • bolt Public

    UMCCR post-processing WGS logic and CLI tool

    umccr/bolt's past year of commit activity
    Python 0 GPL-3.0 1 0 4 Updated Oct 27, 2026
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