remove type error lines in the paf file, remove unused columns#16
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oushujun wants to merge 1 commit into
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remove type error lines in the paf file, remove unused columns#16oushujun wants to merge 1 commit into
oushujun wants to merge 1 commit into
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When I aligned two maize genomes, the paf file contained incomplete lines that will convert numeric columns to characters, then the script crashed becasue it was not expecting characters. I converted numeric columns to numeric type and removed NA-contained rows. I also removed unused columns in the
alignmentdata frame to avoid errors.