Tools for the fight of humans against nature

• Usage
• Commands

Usage

$ npm install -g bioworx
$ bioworx COMMAND
running command...
$ bioworx (-v|--version|version)
bioworx/0.0.1 win32-x64 node-v12.18.4
$ bioworx --help [COMMAND]
USAGE
  $ bioworx COMMAND
...

Commands

• bioworx hello [FILE]
• bioworx help [COMMAND]
• bioworx string:count [STRING] [SUBSTRING]
• bioworx string:kmer [STRING] [CARDINALITY]
• bioworx string:revcompl [SEQUENCE]
• bioworx string:startingpos [FILE]

bioworx hello [FILE]

describe the command here

USAGE
  $ bioworx hello [FILE]

OPTIONS
  -f, --force
  -h, --help       show CLI help
  -n, --name=name  name to print

EXAMPLE
  $ bioworx hello
  hello world from ./src/hello.ts!

See code: src/commands/hello.ts

bioworx help [COMMAND]

display help for bioworx

USAGE
  $ bioworx help [COMMAND]

ARGUMENTS
  COMMAND  command to show help for

OPTIONS
  --all  see all commands in CLI

See code: @oclif/plugin-help

bioworx string:count [STRING] [SUBSTRING]

Returns the number of appearances of in

USAGE
  $ bioworx string:count [STRING] [SUBSTRING]

OPTIONS
  -h, --help  show CLI help

See code: src/commands/string/count.ts

bioworx string:kmer [STRING] [CARDINALITY]

Returns the most frequent k-mer of

USAGE
  $ bioworx string:kmer [STRING] [CARDINALITY]

OPTIONS
  -h, --help    show CLI help
  -s, --simple

See code: src/commands/string/kmer.ts

bioworx string:revcompl [SEQUENCE]

Returns reverse compliment of

USAGE
  $ bioworx string:revcompl [SEQUENCE]

OPTIONS
  -h, --help  show CLI help

See code: src/commands/string/revcompl.ts

bioworx string:startingpos [FILE]

describe the command here

USAGE
  $ bioworx string:startingpos [FILE]

OPTIONS
  -f, --force
  -h, --help       show CLI help
  -n, --name=name  name to print

See code: src/commands/string/startingpos.ts