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PRETEXT_SNAPSHOT - SegFault

bugSomething isn't workingSomething isn't working

HF 1.4.8For release 1.4.8 - bugs and small fixesFor release 1.4.8 - bugs and small fixes

Status: Open.

#480 In sanger-tol/treeval;

· weaglesBio opened on Jun 18, 2026

Resource update - SAMTOOLS_MARKDUP

bugSomething isn't workingSomething isn't working

HF 1.4.8For release 1.4.8 - bugs and small fixesFor release 1.4.8 - bugs and small fixes

Status: Open.

#479 In sanger-tol/treeval;

· weaglesBio opened on Jun 18, 2026

Review suitability of gzipping bed files

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#476 In sanger-tol/treeval;

· DLBPointon opened on Jun 9, 2026

ultra not showing contacts in PretextView

bugSomething isn't workingSomething isn't working

Status: Open.

#475 In sanger-tol/treeval;

· nikostr opened on May 15, 2026

Read pre-processing as an optional subworkflow in treeval

enhancementNew feature or requestNew feature or request

Status: Open.

#474 In sanger-tol/treeval;

· DLBPointon opened on May 13, 2026

Usage yaml documentation outdated

bugSomething isn't workingSomething isn't working

Status: Open.

#471 In sanger-tol/treeval;

· nikostr opened on May 13, 2026

Add option of fastq.gz files to YAML input longread validation.

enhancementNew feature or requestNew feature or request

HF 1.4.8For release 1.4.8 - bugs and small fixesFor release 1.4.8 - bugs and small fixes

Status: Open.

#470 In sanger-tol/treeval;

· weaglesBio opened on Apr 28, 2026

Update to new pretext map version and handle ultra-hires output.

enhancementNew feature or requestNew feature or request

Status: Open.

#462 In sanger-tol/treeval;

· weaglesBio opened on Mar 12, 2026

Handle Synteny field being emtpy (in FULL/FULL_COMBINED)

bugSomething isn't workingSomething isn't working

Status: Open.

#461 In sanger-tol/treeval;

· weaglesBio opened on Mar 6, 2026

Update Seqkit2 modules

Status: Open.

#458 In sanger-tol/treeval;

· DLBPointon opened on Feb 18, 2026

Update UCSC modules

enhancementNew feature or requestNew feature or request

Status: Open.

#457 In sanger-tol/treeval;

· DLBPointon opened on Feb 18, 2026

long-C integration

Status: Open.

#456 In sanger-tol/treeval;

· yumisims opened on Feb 16, 2026