skill: use graph loader compatibility helper

[andrebrait]

Summary

• replace direct networkx.node_link_graph(..., edges='links') calls in generated skills with Graphify's shared compatibility loader
• keep both clustered links and raw edges graph shapes working across supported NetworkX releases
• add a generator regression guard and sanction the audited monolith delta

Verification

• uv run pytest tests/test_skillgen.py -q — 66 passed
• uv run python -m tools.skillgen --check — 134 artifacts match
• uv run python -m tools.skillgen --monolith-roundtrip — passed
• frozen regression test 81b691a7181b4699c75cf8117d95b72e47b08cb9 ran red before the fragment edits and green unchanged afterward
• NetworkX 3.6.1 probe confirmed its default edge key is edges; load_node_link_graph loaded both links and edges fixtures

[andrebrait]

@coderabbitai review

[Copilot]

🟢 Approval recommended

The changes consistently route graph.json deserialization through the existing compatibility helper and include a test guard to prevent regressions, with no functional issues found in the updated snippets.

Pull request overview

This PR updates the skill generator and the committed/generated skill artifacts to load graphify-out/graph.json via Graphify’s shared load_node_link_graph compatibility helper, so graphs written with either links or edges deserialize cleanly across supported NetworkX versions.

Changes:

• Replaced direct json_graph.node_link_graph(..., edges='links') usage in skill snippets with graphify.paths.load_node_link_graph(...).
• Added a sanctioned monolith-diff predicate for the graph-loader swap to keep the monolith roundtrip guard stable.
• Added a regression assertion in tests/test_skillgen.py to prevent reintroducing direct json_graph.node_link_graph(...) calls in rendered artifacts.

File summaries

File	Description
tools/skillgen/gen.py	Sanctions the json_graph.node_link_graph → load_node_link_graph monolith delta via a dedicated predicate.
tools/skillgen/fragments/references/shared/update.md	Updates the references “update” fragment to use the shared loader in the inline Python snippet.
tools/skillgen/fragments/references/query/default.md	Updates the references “query” fragment to use the shared loader in the inline Python snippets.
tools/skillgen/fragments/core/devin.md	Updates the devin core fragment to use the shared loader in all inline graph-load snippets.
tools/skillgen/fragments/core/aider.md	Updates the aider core fragment to use the shared loader in all inline graph-load snippets.
tools/skillgen/expected/graphify__skills__windows__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__windows__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__vscode__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__vscode__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__trae__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__trae__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__pi__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__pi__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__opencode__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__opencode__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__kiro__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__kiro__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__kilo__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__kilo__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__droid__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__droid__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__copilot__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__copilot__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__codex__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__codex__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__claw__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__claw__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__claude__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__claude__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__amp__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__amp__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skills__agents__references__update.md	Regenerates expected artifact to use load_node_link_graph in the update reference snippet.
tools/skillgen/expected/graphify__skills__agents__references__query.md	Regenerates expected artifact to use load_node_link_graph in query reference snippets.
tools/skillgen/expected/graphify__skill-devin.md	Regenerates the expected devin monolith to use load_node_link_graph throughout.
tools/skillgen/expected/graphify__skill-aider.md	Regenerates the expected aider monolith to use load_node_link_graph throughout.
tests/test_skillgen.py	Adds a regression guard ensuring rendered artifacts don’t contain direct json_graph.node_link_graph(...) calls.
graphify/skills/windows/references/update.md	Updates committed Windows “update” reference skill to use load_node_link_graph.
graphify/skills/windows/references/query.md	Updates committed Windows “query” reference skill to use load_node_link_graph.
graphify/skills/vscode/references/update.md	Updates committed VS Code “update” reference skill to use load_node_link_graph.
graphify/skills/vscode/references/query.md	Updates committed VS Code “query” reference skill to use load_node_link_graph.
graphify/skills/trae/references/update.md	Updates committed Trae “update” reference skill to use load_node_link_graph.
graphify/skills/trae/references/query.md	Updates committed Trae “query” reference skill to use load_node_link_graph.
graphify/skills/pi/references/update.md	Updates committed Pi “update” reference skill to use load_node_link_graph.
graphify/skills/pi/references/query.md	Updates committed Pi “query” reference skill to use load_node_link_graph.
graphify/skills/opencode/references/update.md	Updates committed OpenCode “update” reference skill to use load_node_link_graph.
graphify/skills/opencode/references/query.md	Updates committed OpenCode “query” reference skill to use load_node_link_graph.
graphify/skills/kiro/references/update.md	Updates committed Kiro “update” reference skill to use load_node_link_graph.
graphify/skills/kiro/references/query.md	Updates committed Kiro “query” reference skill to use load_node_link_graph.
graphify/skills/kilo/references/update.md	Updates committed Kilo “update” reference skill to use load_node_link_graph.
graphify/skills/kilo/references/query.md	Updates committed Kilo “query” reference skill to use load_node_link_graph.
graphify/skills/droid/references/update.md	Updates committed Droid “update” reference skill to use load_node_link_graph.
graphify/skills/droid/references/query.md	Updates committed Droid “query” reference skill to use load_node_link_graph.
graphify/skills/copilot/references/update.md	Updates committed Copilot “update” reference skill to use load_node_link_graph.
graphify/skills/copilot/references/query.md	Updates committed Copilot “query” reference skill to use load_node_link_graph.
graphify/skills/codex/references/update.md	Updates committed Codex “update” reference skill to use load_node_link_graph.
graphify/skills/codex/references/query.md	Updates committed Codex “query” reference skill to use load_node_link_graph.
graphify/skills/claw/references/update.md	Updates committed Claw “update” reference skill to use load_node_link_graph.
graphify/skills/claw/references/query.md	Updates committed Claw “query” reference skill to use load_node_link_graph.
graphify/skills/claude/references/update.md	Updates committed Claude “update” reference skill to use load_node_link_graph.
graphify/skills/claude/references/query.md	Updates committed Claude “query” reference skill to use load_node_link_graph.
graphify/skills/amp/references/update.md	Updates committed Amp “update” reference skill to use load_node_link_graph.
graphify/skills/amp/references/query.md	Updates committed Amp “query” reference skill to use load_node_link_graph.
graphify/skills/agents/references/update.md	Updates committed Agents “update” reference skill to use load_node_link_graph.
graphify/skills/agents/references/query.md	Updates committed Agents “query” reference skill to use load_node_link_graph.
graphify/skill-devin.md	Updates committed devin monolith to use load_node_link_graph throughout.
graphify/skill-aider.md	Updates committed aider monolith to use load_node_link_graph throughout.

Review details

• Files reviewed: 66/66 changed files
• Comments generated: 0
• Review effort level: Lite

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[andrebrait]

@coderabbitai review

[andrebrait]

CodeRabbit did not respond to the initial review request or the one permitted retry. Proceeding with the independent condensed review and Copilot approval.