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@Imageomics Imageomics Institute

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    146 repositories

    • catalog

      Public template
      Catalog app for Imageomics code, data, models, and spaces hosted on GitHub and Hugging Face. Designed for improved discoverability of Imageomics products, the c…
      githubapiopen-source
      githubapiopen-sourcedatacatalogcodemodelsinventoryopen-sciencespaces
      JavaScript
      •
      MIT License
      •0•10•6•7•Updated Nov 10, 2026Nov 10, 2026

    • Imageomics-guide

      Public
      Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.
      gitmetadatadocumentation
      gitmetadatadocumentationdatacodeguidebest-practicesmodelsprojectscollaboration
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•6•7•1•Updated Nov 10, 2026Nov 10, 2026

    • Collaborative-distributed-science-guide

      Public template
      Template guide to collaborative work, including GitHub and Hugging Face workflows. Co-developed with the Imageomics Guide.
      gitmetadatadocumentation
      gitmetadatadocumentationdatacodeguidebest-practicesmodelsprojectscollaboration
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•1•14•0•Updated Nov 9, 2026Nov 9, 2026

    • GGR_pipeline

      Public
      This work presents a modular software pipeline and end-to-end workflow for video-based animal re-identification, which assigns consistent individual IDs by clus…
      Jupyter Notebook
      •
      MIT License
      •1•1•9•1•Updated Nov 9, 2026Nov 9, 2026

    • beta-stability

      Public
      An independent implementation of the Local Clusters and their Alternatives (LCA) graph-based ID curation algoritihm
      Python
      •
      Apache License 2.0
      •8•1•0•5•Updated Nov 9, 2026Nov 9, 2026

    • repo-exporter

      Public
      Python package to collect key info (Name, description, creation date, last updated date, contributors, etc.) from all repos in a GitHub or Hugging Face organiza…
      githubapimetadata
      githubapimetadatainventorygoogle-sheetsrepository-managementapi-integrationfair-principleshuggingfacemetadata-export
      Python
      •
      MIT License
      •0•2•6•6•Updated Nov 9, 2026Nov 9, 2026

    • OpenCite

      Public
      Web-based tool for generating consistent CITATION.cff and .zenodo.json files from a single structured input form, reducing metadata inconsistencies across resea…
      metadataattributioncitation
      metadataattributioncitationprovenancefairzenodocff-formatcff-citation-validation
      JavaScript
      •
      MIT License
      •0•0•16•9•Updated Nov 9, 2026Nov 9, 2026

    • imageomics.github.io

      Public
      Repository to host the Imageomics Institute's website.
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•0•1•2•Updated Nov 8, 2026Nov 8, 2026

    • cfr

      Public
      Code for CounterFactual Retrieval for Evidence-Aware Individual Animal Identification, accepted at WACV 2027. It provides mask generation, CFR evaluation, and e…
      computer-visionforeground-segmentationanimal-identification
      computer-visionforeground-segmentationanimal-identificationindividual-identificationmask-generationwildlife-reidentificationcounterfactual-retrieval
      Python
      •
      Other
      •1•0•0•2•Updated Nov 6, 2026Nov 6, 2026

    • Bio-VQA

      Public
      Python
      •
      MIT License
      •0•1•0•1•Updated Nov 5, 2026Nov 5, 2026

    • RecSAEI

      Public
      Reconstructive SAE Intervention
      Python
      •
      MIT License
      •0•3•0•0•Updated Nov 5, 2026Nov 5, 2026

    • modeleye

      Public
      Source code for the WACV 2027 paper
      MIT License
      •0•0•0•0•Updated Nov 4, 2026Nov 4, 2026

    • simple-localized-counterfactuals

      Public
      Source code for the CVPR HOW workshop paper
      Jupyter Notebook
      •
      MIT License
      •0•0•0•19•Updated Nov 4, 2026Nov 4, 2026

    • TaxaAdapter

      Public
      [NeurIPS 2026] TaxaAdapter
      Python
      •
      MIT License
      •0•3•0•1•Updated Nov 3, 2026Nov 3, 2026

    • got-milk-monarchs

      Public
      FloraPalooza project for detecting Monarch caterpillar chewing damage on Milkweed plants.
      logistic-regressioncaterpillarleaves
      logistic-regressioncaterpillarleavesmonarchmilkweedpaloozaleaf-damage
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 2, 2026Nov 2, 2026

    • features-as-field-guides

      Public
      A fork of Sparse autoencoders for vision (saev) for dichotomous key discovery
      Python
      •
      MIT License
      •12•0•0•13•Updated Oct 31, 2026Oct 31, 2026

    • SPARROW

      Public
      SPARROW — Solar-Powered Acoustic and Remote Recording Observation Watch. An AI-enabled edge device for biodiversity monitoring with camera-trap imaging and bioa…
      Python
      •
      MIT License
      •20•0•0•5•Updated Oct 31, 2026Oct 31, 2026

    • Prompt_CAM

      Public
      This is an official implementation for PROMPT-CAM: A Simpler Interpretable Transformer for Fine-Grained Analysis (CVPR'25). Explore fine-grained trait distincti…
      computer-visionsaliency-mapfine-grained-classification
      computer-visionsaliency-mapfine-grained-classificationinterpretable-aiexplainable-aixaiinterpretable-machine-learningcounterfactual-explanationsvision-transformer
      Jupyter Notebook
      •
      MIT License
      •7•78•3•1•Updated Oct 30, 2026Oct 30, 2026

    • hpc-inference

      Public
      A high-performance computing solution for efficient batch inference on large-scale image datasets.
      Python
      •
      MIT License
      •0•0•12•3•Updated Oct 25, 2026Oct 25, 2026

    • FuncaPalooza-2025

      Public
      FuncaPalooza: collaborative hands-on event for extracting functional traits from images at OSU, Aug 18-21, 2025.
      workshop-websitefunctional-traitspalooza
      workshop-websitefunctional-traitspalooza
      Creative Commons Zero v1.0 Universal
      •0•5•23•1•Updated Oct 23, 2026Oct 23, 2026

    • emb-explorer

      Public
      An interactive tool for classifying images with a pretrained model and exploring clustering results in 2D space.
      clusteringexploratory-data-analysiseda
      clusteringexploratory-data-analysisedadata-visualizationdimensionality-reductionembeddingexploratory-data-visualizationsimage-exploration
      Python
      •
      MIT License
      •0•8•10•3•Updated Oct 21, 2026Oct 21, 2026

    • TreeOfLife-toolbox

      Public
      Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.
      face-detectioncitizen-scienceimage-filtering
      face-detectioncitizen-scienceimage-filteringanimal-detectionspecimen-recordstree-of-lifeimageomicsdataset-processing
      Jupyter Notebook
      •
      MIT License
      •1•9•11•28•Updated Oct 21, 2026Oct 21, 2026

    • PlotDiversiVision

      Public
      Florapalooza plot diversity image segmentation and bioclip identification
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Oct 16, 2026Oct 16, 2026

    • mind-the-tail

      Public
      This is an official implementation for Mind the Tail: Data Selection through Sparse Concepts. Reallocate training support toward under-represented visual conce…
      Python
      •
      Other
      •0•2•0•0•Updated Oct 16, 2026Oct 16, 2026

    • SAtrEes

      Public
      FloraPalooza project to extract land-use history from RGB images of tree crowns.
      rgbland-usedisturbance
      rgbland-usedisturbancepaloozatree-crownsharvard-forestflyover-data
      R
      •
      MIT License
      •0•0•1•1•Updated Oct 15, 2026Oct 15, 2026

    • bioclip-2

      Public
      Repository for the BioCLIP 2 model project. [NeurIPS'25 Spotlight] BioCLIP 2 is a biological foundation model trained on TreeOfLife-200M. Despite the narrow tra…
      computer-visiontaxonomybiology
      computer-visiontaxonomybiologyclipknowledge-guided-machine-learningimageomics
      Python
      •
      Other
      •12•104•3•1•Updated Oct 14, 2026Oct 14, 2026

    • data-workshop-AH-2024

      Public
      Repository for Mastering Data Management Workshop at the All Hands 2024.
      documentationdata-validationeda
      documentationdata-validationedaprovenancedata-analysisfairdata-managementreproducibilitychecksums
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •6•2•0•0•Updated Oct 13, 2026Oct 13, 2026

    • HypeRGB

      Public
      Unimodal and Multimodal model(s) integrating hyperspectral and RGB image data to classify species ID from herbarium specimens
      MIT License
      •1•0•1•0•Updated Oct 12, 2026Oct 12, 2026

    • biocap

      Public
      Repository for the BioCAP model project. [ICLR'26] Biological foundation model trained on the TreeOfLife-10M dataset paired with a new TreeOfLife-10M Captions d…
      computer-visiontaxonomybiology
      computer-visiontaxonomybiologyclipknowledge-guided-machine-learningimageomicssynthetic-captions
      Python
      •
      Other
      •1•12•0•1•Updated Oct 10, 2026Oct 10, 2026

    • drawers2data

      Public
      This project is an AI/ML computer vision pipeline which automatically segments images of whole museum cabinet drawers into annotated images of individual lots a…
      palooza
      palooza
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•1•Updated Sep 30, 2026Sep 30, 2026
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