docs: Add config tutorial#4231
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@nf-core-bot fix linting |
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@jfy133 - This is a first attempt at a new tutorial. I side on keeping things short and punchy, without too many verbose descriptions. I may have taken this too far. Let me know what you think. |
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Note that I added an ENV variable section as I think this is increasingly important, given syntax changes and setting versions. |
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Sorry - super messy merge after my VS Code did something weird and moved all the comments. |
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@nf-core-bot fix linting |
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Note @christopher-hakkaart the deploy preview still ain't working for that page, I don't know why. Will review the markdown in the meantime |
jfy133
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jfy133
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More minor comments, I will make a PR against nf-core/demo in the meantime to help with validating the output of
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| Re-run the baseline command. No `-c` flag is needed, Nextflow picks the file up automatically: |
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A bit annoying we don't have something to confirm this still...
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I still find this weird. Need to double-check.
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| ```bash | ||
| export NXF_VER=25.10.4 | ||
| export NXF_WORK=$HOME/nf-demo-work |
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I personally wouldn't want to pollute someones home directory with a tutorial it should remain selfcontained... should we start saying 'make a directory called nf-core-configuration-tutorial and have evertyhign running from within there? Then they can easily delete at the end.
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Maybe we should set the ENV variable in the first step 😉
But yes, we can say make a folder and do everything there.
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This PR adding a local module seems to help, I see changes in the execution report (if it doesn't exceed the resourceLimits in the |
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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