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Pull requests: nf-core/riboseq

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Pull requests list

feat: ORF-level differential translation
#189 opened May 22, 2026 by pinin4fjords Member • Draft
1
feat: per-ORF P-site quantification
#188 opened May 22, 2026 by pinin4fjords Member • Draft
2 tasks
1
feat: cross-sample ORF catalogue
#187 opened May 22, 2026 by pinin4fjords Member • Draft
3 tasks
1
feat: Rp-Bp opt-in ORF caller
#186 opened May 22, 2026 by pinin4fjords Member • Draft
2 tasks
1
feat: PRICE opt-in ORF caller
#185 opened May 22, 2026 by pinin4fjords Member • Draft
1
feat: second STAR pass against hybrid transcriptome for RiboCode
#184 opened May 22, 2026 by pinin4fjords Member • Draft
1
feat: --extended_orf_analysis routes hybrid GTF into genome-BAM ORF callers
#183 opened May 22, 2026 by pinin4fjords Member • Draft
1
feat: StringTie novel transcript discovery + hybrid GTF
#182 opened May 22, 2026 by pinin4fjords Member • Draft
1
docs: Ribo-TISH quality stays on canonical annotation (#162)
#181 opened May 22, 2026 by pinin4fjords Member • Draft
2
feat(ribotish/predict): wire optional secondary annotation (-a) through pipeline
#180 opened May 22, 2026 by pinin4fjords Member • Draft
2
feat: demote Ribotricer to opt-in --run_ribotricer
#178 opened May 22, 2026 by pinin4fjords Member • Draft
3
feat: canonical annotation backbone via --canonical_gtf
#177 opened May 22, 2026 by pinin4fjords Member • Draft
2
fix: make plastid_psite the default --te_quantification_method
#176 opened May 22, 2026 by pinin4fjords Member • Draft
2
Riboseq modernisation: Phases 1-3 (#160-#171 + PRICE)
#174 opened May 18, 2026 by pinin4fjords Member • Draft
10 tasks
2
Important! Template update for nf-core/tools v4.0.2
#156 opened Apr 30, 2026 by nf-core-bot Member Loading…
fix: always skip igenomes_base validation
#151 opened Mar 6, 2026 by pinin4fjords Member Loading…
3 tasks
2
Remove hardcoded random seeds from production config
#143 opened Jan 19, 2026 by pinin4fjords Member Loading…
1
SortMeRNA low mem params
#105 opened Apr 30, 2025 by JackCurragh Contributor Loading…
4 of 11 tasks
7
ProTip! What’s not been updated in a month: updated:<2026-05-13.