[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -3,7 +3,7 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: "v5.0.0"
+    rev: "v6.0.0"
     hooks:
       - id: check-added-large-files
       - id: check-case-conflict
@@ -16,7 +16,7 @@ repos:
       - id: trailing-whitespace
 
   - repo: https://github.com/sirosen/texthooks
-    rev: "0.6.8"
+    rev: "0.7.1"
     hooks:
       - id: fix-ligatures
       - id: fix-smartquotes
@@ -30,18 +30,18 @@ repos:
         additional_dependencies: [pyyaml]
 
   - repo: https://github.com/psf/black
-    rev: "24.10.0"
+    rev: "25.1.0"
     hooks:
       - id: black
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: "v1.13.0"
+    rev: "v1.17.1"
     hooks:
       - id: mypy
         exclude: snaphu/io/__init__\.py$
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.8.3"
+    rev: "v0.12.11"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

pyproject.toml

@@ -98,11 +98,13 @@ select = [
   "YTT", # flake8-2020
 ]
 ignore = [
-  "D100", # Missing docstring in public module
-  "D104", # Missing docstring in public package
-  "D105", # Missing docstring in magic method
-  "PLR",  # Pylint Refactor
+  "D100",    # Missing docstring in public module
+  "D104",    # Missing docstring in public package
+  "D105",    # Missing docstring in magic method
+  "PLR",     # Pylint Refactor
+  "PLC0415", # `import` should be at the top-level of a file
 ]
+typing-extensions = false
 
 [tool.ruff.lint.per-file-ignores]
 "**/__init__.py" = ["F401"]

src/snaphu/_util.py

@@ -196,7 +196,9 @@ def read_from_file(
     n = dataset.shape[0]
     for slice_ in slices(0, n, batchsize):
         # Infer the shape and size of the corresponding slice of the dataset.
-        shape = (slice_.stop - slice_.start,) + dataset.shape[1:]
+        first_dim = slice_.stop - slice_.start
+        other_dims = dataset.shape[1:]
+        shape = (first_dim, *other_dims)
         size = np.prod(shape)
 
         # Read a batch of data from the file.

src/snaphu/io/_raster.py

@@ -247,7 +247,7 @@ def nodata(self) -> float | None:
         float or None : The raster's nodata value (may be unset).
 
         The raster's nodata value, or None if no nodata value was set.
-        """
+        """  # noqa: D403
         return self.dataset.nodatavals[self.band - 1]  # type: ignore[no-any-return]
 
     @property
@@ -268,7 +268,7 @@ def __exit__(self, exc_type, exc_value, traceback):  # type: ignore[no-untyped-d
         self.close()
 
     def __array__(
-        self, dtype: DTypeLike | None = None, copy: bool | None = None
+        self, dtype: DTypeLike | None = None, *, copy: bool | None = None
     ) -> np.ndarray:
         if not copy and (copy is not None):
             errmsg = "unable to avoid copy while creating an array as requested"