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@gyorilab

Gyori Lab for Computational Biomedicine

Accelerating discovery in biomedicine using AI @ Northeastern University

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  1. indra indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

    Python 230 82

  2. indra_cogex indra_cogex Public

    INDRA Context Graph Extension

    Jupyter Notebook 16 21

  3. emmaa emmaa Public

    Ecosystem of Machine-maintained Models with Automated Analysis

    Python 11 11

  4. gilda gilda Public

    Grounding of biomedical named entities with contextual disambiguation

    Python 56 16

  5. mira mira Public

    MIRA: machine-assisted modeling of dynamical systems

    Jupyter Notebook 15 11

  6. dglink dglink Public

    Linking data portals to external knowledge

    Python 2

Repositories

Showing 10 of 66 repositories
  • ui_util Public

    This repo creates general utilities for our user interfaces.

    gyorilab/ui_util's past year of commit activity
    Python 0 5 0 1 Updated Oct 26, 2026
  • indralab-vue Public

    A package of Vue Components for use in Indralab web services.

    gyorilab/indralab-vue's past year of commit activity
    Vue 0 4 0 2 Updated Oct 24, 2026
  • indra_db Public

    A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

    gyorilab/indra_db's past year of commit activity
    Python 21 GPL-3.0 13 7 5 Updated Oct 23, 2026
  • openacme Public

    Implementing ACME decision tables on ICD-10 codes

    gyorilab/openacme's past year of commit activity
    Python 0 BSD-2-Clause 3 0 1 Updated Oct 21, 2026
  • mira Public

    MIRA: machine-assisted modeling of dynamical systems

    gyorilab/mira's past year of commit activity
    Jupyter Notebook 15 BSD-2-Clause 11 18 6 Updated Oct 6, 2026
  • indra_cogex Public

    INDRA Context Graph Extension

    gyorilab/indra_cogex's past year of commit activity
    Jupyter Notebook 16 BSD-2-Clause 21 19 8 Updated Sep 29, 2026
  • gyorilab.github.io Public

    Gyori Lab website

    gyorilab/gyorilab.github.io's past year of commit activity
    HTML 4 3 0 0 Updated Sep 28, 2026
  • trialsynth Public

    TrialSynth interprets and integrates clinical trials data from multiple registries in a computable form

    gyorilab/trialsynth's past year of commit activity
    Python 0 BSD-2-Clause 4 0 0 Updated Sep 14, 2026
  • indra-belief-model Public
    gyorilab/indra-belief-model's past year of commit activity
    Python 1 2 0 0 Updated Sep 2, 2026
  • miradb Public

    An automatically extracted database of MIRA models

    gyorilab/miradb's past year of commit activity
    Python 0 BSD-2-Clause 4 0 2 Updated Sep 1, 2026
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