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Name		Name	Last commit message	Last commit date
.ipynb_checkpoints		.ipynb_checkpoints
im_figures		im_figures
seq_figures		seq_figures
20161028_2248_e1_c0_aa_hd1.csv		20161028_2248_e1_c0_aa_hd1.csv
Control AA Fitness.png		Control AA Fitness.png
Control AA R-Squared.png		Control AA R-Squared.png
Control Codon Fitness.png		Control Codon Fitness.png
Control Codon R-Squared.png		Control Codon R-Squared.png
Expt 1 AA Fitness.png		Expt 1 AA Fitness.png
Expt 1 AA R-Squared.png		Expt 1 AA R-Squared.png
Expt 1 Codon Fitness.png		Expt 1 Codon Fitness.png
Expt 1 Codon R-Squared.png		Expt 1 Codon R-Squared.png
Expt 2 AA Fitness.png		Expt 2 AA Fitness.png
Expt 2 AA R-Squared.png		Expt 2 AA R-Squared.png
Expt 2 Codon Fitness.png		Expt 2 Codon Fitness.png
Expt 2 Codon R-Squared.png		Expt 2 Codon R-Squared.png
ForStentor_FromDiscobaAlphaFold2HMMERv2.ipynb		ForStentor_FromDiscobaAlphaFold2HMMERv2.ipynb
HD 2 Control AA Fitness.png		HD 2 Control AA Fitness.png
HD 2 Control AA R-Squared.png		HD 2 Control AA R-Squared.png
HD 2 Expt 1 AA Fitness.png		HD 2 Expt 1 AA Fitness.png
HD 2 Expt 1 AA R-Squared.png		HD 2 Expt 1 AA R-Squared.png
HD 2 Expt 2 AA Fitness.png		HD 2 Expt 2 AA Fitness.png
HD 2 Expt 2 AA R-Squared.png		HD 2 Expt 2 AA R-Squared.png
Intensity_Calc_In_Nuc.csv		Intensity_Calc_In_Nuc.csv
Intensity_Calc_In_Nuc911.csv		Intensity_Calc_In_Nuc911.csv
Intensity_Calc_Total.csv		Intensity_Calc_Total.csv
Intensity_Calc_Total911.csv		Intensity_Calc_Total911.csv
Intensity_calc.py		Intensity_calc.py
UBwt_seq.ape		UBwt_seq.ape
aas.csv		aas.csv
aas_edit.csv		aas_edit.csv
aas_hd1.csv		aas_hd1.csv
aas_hd2.csv		aas_hd2.csv
allele_dic.pkl		allele_dic.pkl
allele_dic_with_WT.pkl		allele_dic_with_WT.pkl
aminotonumber.pkl		aminotonumber.pkl
avg_fitness.py		avg_fitness.py
barcode_quant.py		barcode_quant.py
codons.csv		codons.csv
codons_hd1.csv		codons_hd1.csv
codons_hd2.csv		codons_hd2.csv
dapihist.png		dapihist.png
doug_array.pkl		doug_array.pkl
doug_figure.png		doug_figure.png
doug_figure2.png		doug_figure2.png
doug_script.py		doug_script.py
dw_seq.py		dw_seq.py
ex.fastq		ex.fastq
hd1_fitnesses_with_error.csv		hd1_fitnesses_with_error.csv
image_analysis.py		image_analysis.py
imager_dw.py		imager_dw.py
multiplex.py		multiplex.py
mut_lib.py		mut_lib.py
pymol_bfactor.py		pymol_bfactor.py
residue_type_control.csv		residue_type_control.csv
residue_type_day1.csv		residue_type_day1.csv
residue_type_day2.csv		residue_type_day2.csv
seq_data.py		seq_data.py
seqs_dw.py		seqs_dw.py
sort_residues.py		sort_residues.py
stats_dw.py		stats_dw.py
translate.pkl		translate.pkl
updated_residue_type_day2.csv		updated_residue_type_day2.csv
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