Search results

Does charcoal not support installation via mamba?

Status: Open.

#238 In dib-lab/charcoal;

· SchwarzEM opened on Oct 19, 2023

Both DEMO datasets Fails with: ImportError: cannot import name 'LineagePair' from 'sourmash.lca'

Status: Open.

#237 In dib-lab/charcoal;

· JoshuaTCooper opened on Jul 3, 2023

Error in rule combine_postprocessing_csv

Status: Open.

#236 In dib-lab/charcoal;

· sabdelrazek opened on Mar 7, 2023

GenBank genomes not found

Status: Open.

#235 In dib-lab/charcoal;

· tgurbich opened on Feb 16, 2023

demo fails with "Error in snakemake invocation: Command '['snakemake', '-s', '/home/hh.nku.edu/cooperjo/software/charcoal/charcoal/Snakefile', '--use-conda', '-j', '1', '-j', '4', '--configfile', '/home/hh.nku.edu/cooperjo/software/charcoal/charcoal/conf/defaults.conf', '/home/hh.nku.edu/cooperjo/software/charcoal/charcoal/conf/system.conf', 'demo/demo.conf']' returned non-zero exit status 1."

Status: Open.

#233 In dib-lab/charcoal;

· JoshuaTCooper opened on Feb 10, 2023

What should we benchmark?

Status: Open.

#232 In dib-lab/charcoal;

· ccbaumler opened on Dec 20, 2022

paper: Contamination detection and microbiome exploration with GRIMER

Status: Open.

#231 In dib-lab/charcoal;

· ctb opened on Dec 15, 2022

explore unicity distance of individual contigs in database

Status: Open.

#230 In dib-lab/charcoal;

· ctb opened on Nov 23, 2022

charcoal analysis of single assembly file

Status: Open.

#229 In dib-lab/charcoal;

· gaworj opened on Oct 20, 2022

update database download to farm links

Status: Open.

#228 In dib-lab/charcoal;

· ctb opened on Sep 5, 2022

add test requirements to ...environment? pip install? something?

Status: Open.

#227 In dib-lab/charcoal;

· ctb opened on Aug 24, 2022

update env-reporting.yml version pins

Status: Open.

#226 In dib-lab/charcoal;

· ctb opened on Aug 23, 2022