All pull requests

Pull requests

• ENH: Remove dead code from tract_math

  #147·demianw opened Nov 4, 2026Owner·

  ·

• ENH: Declare SciPy and scikit-learn as a tract_math extra

  #146·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Report standard deviations, not variances, in tract_math

  #145·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Report tract_math operation errors instead of a usage error

  #144·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Fix crashing tract_math operations

  #143·demianw opened Nov 4, 2026Owner·

  ·

• BUG: Fix swapped superior_of and inferior_of

  #142·demianw opened Nov 4, 2026Owner·

  ·
  1

• STYLE: Use one helper to invert the tract to label maps

  #140·demianw opened Nov 4, 2026Owner·

  ·
  1

• STYLE: Remove Python 2 leftovers from the query processor and shell

  #139·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Make the command-line tools usable in batch runs

  #138·demianw opened Nov 4, 2026Owner·

  ·

• BUG: Make save('name') in queries mark the query for output

  #137·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Remove dead code from the core package

  #136·demianw opened Nov 4, 2026Owner·

  ·

• BUG: Compute label bounding boxes the same way with or without SciPy

  #135·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Cache the test data in CI

  #134·demianw opened Nov 4, 2026Owner·

  ·

• BUG: Raise WMQL errors instead of Python exceptions for invalid queries

  #133·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Remove repository cruft

  #132·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Remove the unmaintained tract_querier.nipype interfaces

  #131·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Report missing and broken query files clearly

  #130·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Ignore tracts with fewer than 2 points with a warning

  #129·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Find the bundled query files with importlib.resources

  #128·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Take __version__ from setuptools_scm instead of hard-coding 0.1

  #127·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Apply --bounding_box_affine_transform consistently to tracts and atlas

  #126·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Read and write MRtrix .tck tractographies

  #125·demianw opened Nov 4, 2026Owner·

  ·
  1

• ENH: Replace deprecated VTK and private NiBabel APIs

  #124·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Validate tracts_data in Tractography on Python 3

  #123·demianw opened Nov 4, 2026Owner·

  ·
  1

• BUG: Keep tract indices when applying the length threshold

  #122·demianw opened Nov 4, 2026Owner·

  ·
  1