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remove src/rnaglib/tasks/RNA_Ligand/data/ligand_classes.json
build
#565:
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implement new, MaSIF-Ligand-inspired, version of RNA-Ligand
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update RNA-GO task
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implement F-max metric for RNA-GO
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add data indicating ligand clusters for RNA-Ligand
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fix RNAGo.post_process() to persist computed cd_hit/USalign distances…
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fix RNA-Ligand behavior in debug mode
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fix conflict
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bump codecov-action to v7 to fix Node 20 deprecation warnings
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bump codecov-action to v7 to fix Node 20 deprecation warnings
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silence pulp and forgi deprecation warnings in tests
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fix CI: install locarna via micromamba/bioconda, not apt
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fix CI: install locarna and cache RNA-FM weights from HF mirror
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vendor RNA-align source to fix CI download 403
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vendor US-align source to fix CI download 403
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require python >=3.10
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fix download() content-length crash and LigandIdentification None-fam…
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add natural modification annotators
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restrict annotated modifications to natural modifications in RNA-CM
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add auxiliary files for RNA-Ligand
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turn RNA-Ligand into a chemical family prediction task
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adapt RNA-ligand demo to the end of the task-specific balanced sampler
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remove crystallization enhancers from small molecule annotations by d…
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add sulfur to HARIBOSS filter's allowed atoms
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Discard RNA or protein residues misannotated as ligands
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