Quick Start

Scan mode

java -Xmx2G -jar bamscan.jar -i [input.tsv] -b [input.bam] -m scan -s peptide -c primary -e -@ 4

Target mode

java -Xmx2G -jar bamscan.jar -i [input.tsv] -b [input.bam] -m target -s peptide -c primary -@ 4