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1. rosetta-martini-gromacs-protein-md rosetta-martini-gromacs-protein-md Public

   Multi-scale molecular dynamics workflow using Rosetta, Martinize2 & Martini 3, INSANE, CG2AT in GROMACS to characterize the structural and thermodynamic impact of pathogenic variants on proteins

   C

2. image-analysis-smFISH image-analysis-smFISH Public

   Computer vision smFISH image analysis using fine tuned Cellpose segmentation models to quantify single-cell mRNA expression across treatment conditions

   Jupyter Notebook

3. snRNAseq-R-pipeline snRNAseq-R-pipeline Public

   R- and Snakemake-based pipeline for single-nucleus RNAseq data and downstream analysis with Geneformer foundation model

   R

4. ai-protein-ensemble-variant ai-protein-ensemble-variant Public

   AI-based protein ensemble analysis pipeline for wild-type and mutant variants using BioEmu

   Python

5. osd47-spaceflight-multiomics osd47-spaceflight-multiomics Public

   Analysis of NASA OSD-47 multiomics data to identify spaceflight induced biological patterns

   HTML

6. earthdata-drought-crop-forecast earthdata-drought-crop-forecast Public

   Drought and crop forecasting from satellite soil moisture and precipitation data using computer vision models

   Python