V2.1.1 minor bug fixes - #4
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- Fix a crash when running without a time limit set - Fix cases where the tool wrongly reported "no solution" for networks with transport-only metabolites - Fix a crash when the solver returned empty or incomplete output - Fix an argument error affecting the seed detection option - Metabolites needed for biomass production are now correctly proposed as possible seeds, even when their only producer was removed during network cleanup
seed2lp used to crash with a raw Python error when run on a network file older than the SBML Level 3 format. It now checks this upfront and explains how to upgrade the file with cobrapy before continuing. Fixes #3
The test files were renamed with a test_ prefix for pytest auto-discovery, but the CI workflow still called them by their old names and failed. Now it just runs pytest, which discovers them all.
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This release bundles several fixes for crashes and incorrect results reported by users.
Closes #3