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Inconsistent notation for the decay shape parameter (shape vs r) across model, functions, plots, and docs

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#293 In UCD-SERG/serodynamics;

· Kwan-Jenny opened on Aug 17, 2026

ci: Claude review fails instantly with is_error:true and $0.00 cost (likely CLAUDE_CODE_OAUTH_TOKEN)

Status: Open.

#281 In UCD-SERG/serodynamics;

· dem-extra1 opened on Jul 29, 2026

Auto-sync the vendored .claude/skills/reprexes copy with the ai-config source

Status: Open.

#272 In UCD-SERG/serodynamics;

· d-morrison opened on Jul 18, 2026

add a params() function

Status: Open.

#271 In UCD-SERG/serodynamics;

· d-morrison opened on Jul 14, 2026

Develop Sample Size Calculation Vignette

Status: Open.

#269 In UCD-SERG/serodynamics;

· sschildhauer opened on Jul 8, 2026

write long-to-wide and wide-to-long conversion functions for sr_params objects

Status: Open.

#268 In UCD-SERG/serodynamics;

· d-morrison opened on Jul 6, 2026

use badger

Status: Open.

#251 In UCD-SERG/serodynamics;

· d-morrison opened on Jun 18, 2026

use snapr

Status: Open.

#250 In UCD-SERG/serodynamics;

· d-morrison opened on Jun 18, 2026

Fix plot_trace parenthesis

Status: Open.

#249 In UCD-SERG/serodynamics;

· sschildhauer opened on Jun 17, 2026

modify lintr config: prescribe single-indent over hanging indent

Status: Open.

#247 In UCD-SERG/serodynamics;

· d-morrison opened on Jun 14, 2026

Make diagnostic plots work on population parameters as an option

Status: Open.

#243 In UCD-SERG/serodynamics;

· sschildhauer opened on Jun 4, 2026

[manuscript] Run and cache full run_mod() + serocalculator pipeline outputs for camera-ready rendering

manuscript

Status: Open.

#238 In UCD-SERG/serodynamics;

· Kwan-Jenny opened on May 25, 2026