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First push of prostate project files#4

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vincent-noel merged 11 commits into
PhysiBoSS-Models:mainfrom
ArnauMontagud:prostate
Sep 26, 2025
Merged

First push of prostate project files#4
vincent-noel merged 11 commits into
PhysiBoSS-Models:mainfrom
ArnauMontagud:prostate

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@ArnauMontagud

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Description

This repository is an update of the prostate model to version 2.2.3 of PhysiBoSS.

Checklist

  • Does your model compile on all os ?
    I have only tested it on Linux

  • Have you informed the metadata file (model.yml)

  • Have you written a README.md file ?

  • Do you accept to become a maintainer of this model
    Yes, who else? ;p

vincent-noel

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@vincent-noel vincent-noel self-requested a review September 1, 2025 18:14

@vincent-noel vincent-noel left a comment

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Hi Arnau !

First of all, thanks for taking the time. Everything seems to work fine, except the death phases duration definition, which were using the old format. Somehow it doesn't crash when used for cell cycle, but do crash when defined for death (@rheiland ?)

If you think it' ok, accept the changes and I'll already create the repo.

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This old format of defining phases rates (instead of durations) for death model crashes in studio.

Comment thread config/PhysiCell_settings_LNCaP.xml Outdated
Comment thread config/PhysiCell_settings_LNCaP.xml Outdated
Comment thread config/PhysiCell_settings_LNCaP_Luminespib_2.xml Outdated
Comment thread config/PhysiCell_settings_LNCaP_Luminespib_2.xml Outdated
Comment thread config/PhysiCell_settings_LNCaP_Luminespib_Pictilisib_2.xml Outdated
Comment thread config/PhysiCell_settings_LNCaP_Luminespib_Pictilisib_2.xml Outdated
Comment thread config/PhysiCell_settings_LNCaP_Pictilisib_2.xml Outdated
Comment thread config/PhysiCell_settings_LNCaP_Pictilisib_2.xml Outdated
ArnauMontagud and others added 8 commits September 2, 2025 16:47
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
Co-authored-by: Vincent Noël <contact@vincent-noel.fr>
@ArnauMontagud

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I agree with the changes, thanks for the review!

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Two more things now that I had a better look

Comment thread model.yml Outdated
Comment thread model.yml
@vincent-noel vincent-noel force-pushed the main branch 3 times, most recently from af8dccc to e7bf76b Compare September 12, 2025 17:05
@vincent-noel

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Good for me, thanks !

@vincent-noel vincent-noel merged commit a3cc06d into PhysiBoSS-Models:main Sep 26, 2025
6 checks passed
vincent-noel added a commit that referenced this pull request Sep 26, 2025
This reverts commit a3cc06d, reversing
changes made to e7bf76b.
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2 participants