Repository navigation
Remove ToullligQC and rsync to HPC for ONT data on preproc - #516
Merged
ssjunnebo merged 5 commits intoNov 3, 2026
Merged
Conversation
Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## master #516 +/- ##
==========================================
- Coverage 26.15% 25.43% -0.73%
==========================================
Files 37 37
Lines 5590 5450 -140
==========================================
- Hits 1462 1386 -76
+ Misses 4128 4064 -64 ☔ View full report in Codecov by Harness. |
ssjunnebo
merged commit Nov 3, 2026
60187f0
into
NationalGenomicsInfrastructure:master
11 checks passed
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
ToulligQC is included in Seqinspector and we can start testing it out on Miarka. Since we no longer run ToulligQC on the preproc, there is nothing to sync from the preproc that hasn't already been synced from the promethion. Since the rsync is currently failing due to the updated rsync version on Miarka, we decided to remove the rsync and running of ToulligQC from TACA.