Issues

• inference: "large" generates multiple errors

  AI-sandbox/gnomix#62 · Filter by author BgroveP opened on Oct 3, 2026

• sklearn depreciation warning for penalty argument

  AI-sandbox/gnomix#61 · Filter by author BgroveP opened on Oct 3, 2026

• More information in the output please

  AI-sandbox/gnomix#60 · Filter by author BgroveP opened on Oct 3, 2026

• AttributeError: module 'xgboost.compat' has no attribute 'XGBoostLabelEncoder'

  AI-sandbox/gnomix#59 · Filter by author JaehyunParkBiostat opened on Jul 23, 2026

• Choice of populations to include in own model

  AI-sandbox/gnomix#57 · Filter by author JosieLikesCats opened on Nov 14, 2025

• Gnofix issue: temporarily suspended

  AI-sandbox/gnomix#56 · Filter by author bioramg opened on Oct 9, 2025

• Mask Admixed sites in VCF file

  AI-sandbox/gnomix#55 · Filter by author Tannervanorden opened on Mar 12, 2025

• Missing data in reference?

  AI-sandbox/gnomix#54 · Filter by author jamesfifer opened on Feb 14, 2025

• ImportError related to allel, libpmix.so

  AI-sandbox/gnomix#53 · Filter by author QingData opened on Dec 9, 2024

• Running Gnomix for 600K individuals

  AI-sandbox/gnomix#52 · Filter by author vicbp1 opened on Nov 15, 2024

• Bash script "download_pretrained_models.sh" doesnt work

  AI-sandbox/gnomix#51 · Filter by author lcsfaria opened on Jul 25, 2024
  3

• unsure if constructed models in GRCh38 are correct

  AI-sandbox/gnomix#50 · Filter by author vifehe opened on Jun 26, 2024

• Merging MSP and VCF variant/ ancestry calling is .0|.1 correct?

  AI-sandbox/gnomix#48 · Filter by author pediconeC opened on Mar 1, 2024

• Error while training

  AI-sandbox/gnomix#47 · Filter by author EfraMP opened on Feb 12, 2024
  1

• Stucking at analysing model performance

  AI-sandbox/gnomix#46 · Filter by author bgyuris opened on Nov 24, 2023
  2

• Pre-Trained Models Calibration Issue

  AI-sandbox/gnomix#44 · Filter by author maecorine opened on Sep 30, 2023
  1

• Can pre-trained models be used on GRCh38 data?

  AI-sandbox/gnomix#43 · Filter by author mojoman666 opened on Sep 15, 2023
  1

• error of "struct.error: 'i' format requires -2147483648 <= number <= 2147483647"

  AI-sandbox/gnomix#42 · Filter by author buyske opened on Jun 19, 2023
  2

• Not Non-negative probabilities when training the model from scratch

  AI-sandbox/gnomix#40 · Filter by author jikhashkya opened on Jan 23, 2023
  2

• Error when training model from scratch

  AI-sandbox/gnomix#39 · Filter by author oshiomah1 opened on Jul 28, 2022
  2

• Insane memory usage

  AI-sandbox/gnomix#32 · Filter by author BEFH opened on Jun 14, 2022
  6

  

• Duplicated header in vcf output

  AI-sandbox/gnomix#30 · Filter by author weekend37 opened on May 30, 2022
  

• Gnofix standalone functionality

  AI-sandbox/gnomix#29 · Filter by author imanhamid opened on May 20, 2022
  2

• Versioned releases

  AI-sandbox/gnomix#27 · Filter by author BEFH opened on May 19, 2022
  4

• Issue in training mode : Qt platform plugin xcb

  AI-sandbox/gnomix#24 · Filter by author jcgrenier opened on Apr 6, 2022