Release 0.5.1 alpha

• Allow for different models (gradient boosted trees, random forest ... )
• Provide scripts to build different models
• simulate_metagenomes for generating training data for model.xml
• change from model outputting TRUE FALSE to outputting probability
• --knob tunes model towards higher sensitivity (closer to 0) or higher precision (closer to 1). Default is 0.5. actual performance differences depend on the dataset
• --profile_dir can set a different profile output

v0.2.1a

Bug fixes:

• If map file path is provided but an empty string, exit
• Internal bug with gzipped path. Sams were not found

UI:

• Map does not require the specification of all output directories anymore. backwards compatibility should be maintained

Misc:

• Add binary protal_avx2

0.2 alpha

Non algorithmic changes to clean up interface and remove bugs

• gzip now works via pigz to remove the bottleneck for writing out a gzip stream
• Cleaned up --help and interface. -1- 2- 3 are now usable
• Remove strain-level bug where multithreading crashed cpmml

First alpha release of protal

First alpha release of protal. A link to the reference database will be added soon.