Tutorial
The Jupyter notebook demonstrates how SLIX can be used to analyze SLI measurements and to visualize the results. For example, it allows to display the generated parameter maps in different colors, and to show the orientations of (crossing) nerve fibers as colored lines (vector maps) by computing unit vector maps from the direction maps. The following vector map has been generated with the function visualize_unit_vectors, using alpha = 0.8 (defining the transparency of the background image), thinout = 30 (i.e. 30 x 30 pixels were evaluated together), and background_threshold = 0.7 (i.e. if more than 70% of the evaluated pixels are -1, no vector will be computed).
