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perf: speed up runtime pruning and run-end execution #12888

Job	Run time
Rust publish dry-run	45s
check-java-publish-build (aarch64-unknown-linux-gnu, runs-on=37975978051/runner=arm64-medium/imag...	2m 17s
Python (wheel build)	17m 38s
check-java-publish-build (x86_64-unknown-linux-gnu, runs-on=37975978051/runner=amd64-medium/image...	2m 14s
Compat check / compat-test	7m 53s
	30m 47s