Issues

• New option -cyclize for prediction of cyclic peptides not working

  uw-ipd/RoseTTAFold2#42 · Filter by author ajian-he opened on Nov 3, 2025

• numpy errors now on new install

  uw-ipd/RoseTTAFold2#41 · Filter by author colles2 opened on May 9, 2025
  2

• RuntimeError: CUDA error: uncorrectable ECC error encountered

  uw-ipd/RoseTTAFold2#40 · Filter by author seongguheo opened on Dec 31, 2024

• ERROR: failed to load model

  uw-ipd/RoseTTAFold2#37 · Filter by author zbekkhozhin opened on May 21, 2024

• Non-standard aa residues identified from RF2 prediction

  uw-ipd/RoseTTAFold2#34 · Filter by author Hossen-sahadot97 opened on Apr 7, 2024

• CUDA error out of memory

  uw-ipd/RoseTTAFold2#29 · Filter by author lloydtripp opened on Feb 19, 2024
  3

• Is there a redundant addition of positional encoding in the IterBlock section?

  uw-ipd/RoseTTAFold2#28 · Filter by author ackbar03 opened on Jan 28, 2024

• download bfd

  uw-ipd/RoseTTAFold2#26 · Filter by author biopig opened on Dec 21, 2023

• Packaged RF2-linux.yml pins pytorch-cuda=11.7, may lead to issues with CUDA version

  uw-ipd/RoseTTAFold2#25 · Filter by author matspunt opened on Nov 14, 2023
  8

• DGLError

  uw-ipd/RoseTTAFold2#24 · Filter by author avilella opened on Nov 10, 2023

• competition multimer analysis -- does chain order matter?

  uw-ipd/RoseTTAFold2#22 · Filter by author avilella opened on Oct 12, 2023

• RuntimeError: Sizes of tensors must match except in dimension 0

  uw-ipd/RoseTTAFold2#21 · Filter by author wonyoungtae opened on Sep 20, 2023
  4

• conda install conflicting issue

  uw-ipd/RoseTTAFold2#19 · Filter by author frankligy opened on Aug 27, 2023
  1

• Predicted Structures as Templates for Multimer

  uw-ipd/RoseTTAFold2#18 · Filter by author DrLeucine opened on Aug 23, 2023
  3

• MMSeq2 for speeding up MSA gemeration?

  uw-ipd/RoseTTAFold2#17 · Filter by author gezmi opened on Aug 15, 2023

• 'cuda:0' parameter passthrough for multi-GPU setup

  uw-ipd/RoseTTAFold2#15 · Filter by author avilella opened on Jul 31, 2023

• Rosetta command line options

  uw-ipd/RoseTTAFold2#14 · Filter by author LUKASinScience opened on Jul 18, 2023

• RuntimeError: Sizes of tensors must match except in dimension 0

  uw-ipd/RoseTTAFold2#13 · Filter by author akashbahai opened on Jul 5, 2023
  4

• hhblits seems to be taking forever

  uw-ipd/RoseTTAFold2#11 · Filter by author avilella opened on Jul 3, 2023

• Subunits of icosahedral symmetry

  uw-ipd/RoseTTAFold2#10 · Filter by author Abhishaike opened on Jun 30, 2023

• How can I provide the initial template structure?

  uw-ipd/RoseTTAFold2#7 · Filter by author aravinda1879 opened on Jun 14, 2023
  2

• Weights license

  uw-ipd/RoseTTAFold2#4 · Filter by author prihoda opened on May 30, 2023

• can users update the database manually?

  uw-ipd/RoseTTAFold2#3 · Filter by author GangyuSun opened on May 30, 2023