PyMOD3.0.2 throws error in PyMOL 3.1 incentive version on Mac OS

[MooersLab]

I am using PyMOL 3.1.3 on Mac OS Sequoia with a M4 chip.

A popup window says

cannot import name 'dict_of_matrices' from 'pymod_lib.pymod_vars' (/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_vars.py)

The backtrace is

Traceback (most recent call last):
  File "/Users/blaine/.pymol/startup/pymod3/__init__.py", line 298, in startup_pymod
    from pymod_lib import pymod_main
  File "/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_main/__init__.py", line 37, in <module>
    from ._development import PyMod_development
  File "/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_main/_development.py", line 12, in <module>
    from pymod_lib.pymod_seq.seq_star_alignment import global_pairwise_alignment_cs
  File "/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_seq/seq_star_alignment.py", line 12, in <module>
    from pymod_lib.pymod_vars import dict_of_matrices
ImportError: cannot import name 'dict_of_matrices' from 'pymod_lib.pymod_vars' (/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_vars.py)

[SerenaRosi]

Hi, Thank you for reporting this issue. Unfortunately, I was unable to reproduce the error on my end. Could you please provide more details to help us investigate further? Specifically: - How was PyMOL installed (e.g., via conda, Homebrew, official installer)? - Which version of Biopython are you using? - Any additional relevant environment details (e.g., OS, Python version)? With this information, we can better diagnose the problem. Best, Serena Il giorno mar 4 feb 2025 alle ore 00:18 Blaine Mooers < ***@***.***> ha scritto:

…

A popup window says cannot import name 'dict_of_matrices' from 'pymod_lib.pymod_vars' (/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_vars.py) The backtrace is Traceback (most recent call last): File "/Users/blaine/.pymol/startup/pymod3/__init__.py", line 298, in startup_pymod from pymod_lib import pymod_main File "/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_main/__init__.py", line 37, in <module> from ._development import PyMod_development File "/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_main/_development.py", line 12, in <module> from pymod_lib.pymod_seq.seq_star_alignment import global_pairwise_alignment_cs File "/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_seq/seq_star_alignment.py", line 12, in <module> from pymod_lib.pymod_vars import dict_of_matrices ImportError: cannot import name 'dict_of_matrices' from 'pymod_lib.pymod_vars' (/Users/blaine/.pymol/startup/pymod3/pymod_lib/pymod_vars.py) — Reply to this email directly, view it on GitHub <#15>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AQIJQFGVST46KK4VSPBSYVL2N72LBAVCNFSM6AAAAABWNHYRYCVHI2DSMVQWIX3LMV43ASLTON2WKOZSHAZDQNZWGQYTSMA> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>