Potentially we should switch from the individual fastq_align_{aligner} subworkflows to fastq_align_dna.
For reference see here: nf-core/modules#11075
Potential to dos:
- Adding
chromap to fastq_align_dna
- How do we want to deal with
star, we would need to discuss that.
Potentially we should switch from the individual
fastq_align_{aligner}subworkflows tofastq_align_dna.For reference see here: nf-core/modules#11075
Potential to dos:
chromaptofastq_align_dnastar, we would need to discuss that.