diff --git a/docs/superpowers/specs/2026-06-20-root-matching-workspace-design.md b/docs/superpowers/specs/2026-06-20-root-matching-workspace-design.md
new file mode 100644
index 00000000..fbbe0ae4
--- /dev/null
+++ b/docs/superpowers/specs/2026-06-20-root-matching-workspace-design.md
@@ -0,0 +1,75 @@
+# Drop root-matching workspace (#699)
+
+## Problem
+
+When the workspace glob in `pnpm-workspace.yaml` (or the `workspaces` field) matches the
+**project root directory itself** — e.g. `packages: ["."]`, or a broad `./**` that
+re-includes the root — `@manypkg` returns the root as one of `packages.packages`.
+`createProject` (project-discovery.ts) then maps it to a sub-workspace with an empty
+`relativeDir`, producing a workspace with an empty id and empty relativePath that duplicates
+the root workspace.
+
+That degenerate workspace later fails label validation with a confusing message:
+
+```
+Workspace "root" has label "" which conflicts with the ID of workspace "".
+```
+
+This is the "single workspace in monorepo currently errors during detection" case behind the
+`it.todo` in `workspaces-detection.test.ts`. (A genuine single *sub-package* monorepo — root
+plus one `packages/foo` — already works.)
+
+## Decision
+
+Treat a root-matching workspace pattern as **valid**: drop the root match, since the root is
+already its own workspace. The user's config "just works" instead of erroring.
+
+## Design
+
+### Change
+
+In `createProject` (`packages/project-resolver/src/project-discovery.ts`), filter
+`packages.packages` to exclude any package whose absolute `dir` equals `packages.rootDir`
+before mapping to workspaces:
+
+```ts
+workspaces: packages.packages
+    .filter((pkg) => pkg.dir !== packages.rootDir)
+    .map((pkg) => createWorkspace(pkg))
+    .sort((a, b) => a.relativePath.localeCompare(b.relativePath))
+```
+
+`pkg.dir` and `packages.rootDir` are both absolute paths from `@manypkg`; equality is the
+precise "this discovered package is the root" condition, robust regardless of how the
+relative path stringifies (`""` vs `"."`).
+
+### Scope
+
+One `.filter` in one function. No new files, no public-API change. `createWorkspace`,
+`createRootWorkspace`, and the alias/label validation are untouched — the degenerate
+workspace simply never gets created, so the downstream label-collision error no longer
+fires.
+
+### Behavior after
+
+- `packages: ["."]` plus real sub-packages → project resolves to root + the real
+  sub-packages, no empty workspace, exit 0.
+- A pattern matching only the root → project resolves to root with zero sub-workspaces.
+- Genuine sub-package monorepos are unaffected (their package dirs never equal rootDir).
+
+### Error handling
+
+None added — the case is now valid rather than an error.
+
+## Testing
+
+Implement the deferred `it.todo("single workspace in monorepo")` in
+`workspaces-detection.test.ts`: a fixture with `pnpm-workspace.yaml` matching `.` plus a
+real sub-package, asserting the project resolves cleanly (root + the real sub, no empty
+workspace) via `--show-config --config-key project` / `--list-workspaces`. Optionally a
+project-resolver-level assertion that no workspace has an empty relativePath.
+
+## Spec
+
+`spec/06-project.md` — Workspace Discovery gains the root-exclusion rule. CHANGELOG entry +
+version bump to 4.1.1 (PATCH: corrects detection behavior; #698's 4.1.0 already merged).
diff --git a/packages/nadle/test/__snapshots__/features/workspaces/workspaces-detection.test.ts.snap b/packages/nadle/test/__snapshots__/features/workspaces/workspaces-detection.test.ts.snap
index 49cb3a07..d7163e71 100644
--- a/packages/nadle/test/__snapshots__/features/workspaces/workspaces-detection.test.ts.snap
+++ b/packages/nadle/test/__snapshots__/features/workspaces/workspaces-detection.test.ts.snap
@@ -1,5 +1,41 @@
 // Vitest Snapshot v1, https://vitest.dev/guide/snapshot.html
 
+exports[`workspaces detection > ignores a workspace pattern that matches the project root 1`] = `
+---------- Context -----------
+Working Directory: /ROOT/test/__fixtures__/monorepo/__temp__/__{hash}__
+Command: /ROOT/lib/cli.js --max-workers 1 --no-footer --show-config --config-key project
+---------- Stdout ------------
+[log] {
+  "rootWorkspace": {
+    "label": "",
+    "packageJson": {
+      "name": "root",
+      "type": "module"
+    },
+    "absolutePath": "/ROOT/test/__fixtures__/monorepo/__temp__/__{hash}__",
+    "dependencies": [],
+    "relativePath": ".",
+    "configFilePath": "/ROOT/test/__fixtures__/monorepo/__temp__/__{hash}__/nadle.config.ts",
+    "id": "root"
+  },
+  "packageManager": "pnpm",
+  "currentWorkspaceId": "root",
+  "workspaces": [
+    {
+      "id": "packages:only",
+      "label": "packages:only",
+      "absolutePath": "/ROOT/test/__fixtures__/monorepo/__temp__/__{hash}__/packages/only",
+      "relativePath": "packages/only",
+      "dependencies": [],
+      "configFilePath": null,
+      "packageJson": {
+        "name": "only"
+      }
+    }
+  ]
+}
+`;
+
 exports[`workspaces detection > multiple packages 1`] = `
 ---------- Context -----------
 Working Directory: /ROOT/test/__fixtures__/monorepo/__temp__/__{hash}__
diff --git a/packages/nadle/test/features/workspaces/workspaces-detection.test.ts b/packages/nadle/test/features/workspaces/workspaces-detection.test.ts
index a9cef740..448316ea 100644
--- a/packages/nadle/test/features/workspaces/workspaces-detection.test.ts
+++ b/packages/nadle/test/features/workspaces/workspaces-detection.test.ts
@@ -3,11 +3,27 @@ import { PACKAGE_JSON } from "@nadle/project-resolver";
 import { expectPass, withFixture, CONFIG_FILE, PNPM_WORKSPACE, createPackageJson, createPnpmWorkspace } from "setup";
 
 describe("workspaces detection", () => {
-	// TODO(#699): blocked on a behavior decision. A monorepo whose pnpm-workspace
-	// matches exactly one package currently errors during detection. Once #699
-	// settles the intended behavior (valid single-workspace monorepo vs. a clear
-	// error message), assert it.
-	it.todo("single workspace in monorepo");
+	it("ignores a workspace pattern that matches the project root", async () => {
+		// A pattern of "." matches the root directory. The root is already its own
+		// workspace, so the match is dropped instead of creating a degenerate empty
+		// workspace that would fail label validation. The real sub-package resolves.
+		await withFixture({
+			fixtureDir: "monorepo",
+			testFn: async ({ exec }) => {
+				await expectPass(exec`--show-config --config-key project`);
+			},
+			files: {
+				[CONFIG_FILE]: "",
+				[PACKAGE_JSON]: createPackageJson("root"),
+				[PNPM_WORKSPACE]: createPnpmWorkspace([".", "packages/*"]),
+				packages: {
+					only: {
+						[PACKAGE_JSON]: createPackageJson("only")
+					}
+				}
+			}
+		});
+	});
 
 	it("one package", async () => {
 		await withFixture({
diff --git a/packages/project-resolver/src/project-discovery.ts b/packages/project-resolver/src/project-discovery.ts
index 7f705159..5cc6f87e 100644
--- a/packages/project-resolver/src/project-discovery.ts
+++ b/packages/project-resolver/src/project-discovery.ts
@@ -39,7 +39,13 @@ async function createProject(packages: Packages): Promise<Project> {
 		rootWorkspace,
 		packageManager: packages.tool.type,
 		currentWorkspaceId: rootWorkspace.id,
-		workspaces: packages.packages.map((pkg) => createWorkspace(pkg)).sort((a, b) => a.relativePath.localeCompare(b.relativePath))
+		// A workspace pattern can match the project root itself (e.g. "."). The root is
+		// already represented by rootWorkspace, so drop that match instead of creating a
+		// degenerate empty-path workspace that would later fail label validation.
+		workspaces: packages.packages
+			.filter((pkg) => pkg.dir !== packages.rootDir)
+			.map((pkg) => createWorkspace(pkg))
+			.sort((a, b) => a.relativePath.localeCompare(b.relativePath))
 	};
 
 	return resolveWorkspaceDependencies(project);
diff --git a/spec/06-project.md b/spec/06-project.md
index f45f0ac2..32c0df54 100644
--- a/spec/06-project.md
+++ b/spec/06-project.md
@@ -44,7 +44,10 @@ Child workspaces are discovered via the package manager's workspace configuratio
 - **npm/yarn**: `workspaces` field in root `package.json`
 
 Each discovered package directory becomes a workspace (see
-[07-workspace.md](07-workspace.md)).
+[07-workspace.md](07-workspace.md)), **except the project root itself**: a workspace
+pattern that matches the root directory (for example a pattern of `.`) does not create a
+second workspace, because the root is already represented by the root workspace. Such a
+match is ignored rather than treated as an error.
 
 Workspaces are sorted by their relative path for deterministic ordering.
 
diff --git a/spec/CHANGELOG.md b/spec/CHANGELOG.md
index c20eb83c..48a39e33 100644
--- a/spec/CHANGELOG.md
+++ b/spec/CHANGELOG.md
@@ -8,6 +8,16 @@ Versioning follows [Semantic Versioning](https://semver.org/):
 - **MINOR**: New concept, new section, or materially expanded rules
 - **PATCH**: Clarifications, corrections, wording improvements
 
+## 4.1.1 — 2026-06-21
+
+### Changed
+
+- 06-project: Workspace discovery now ignores a workspace pattern that matches the project
+  root directory (e.g. a pattern of `.`). Previously such a match produced a degenerate
+  empty-path workspace duplicating the root, which then failed label validation with a
+  confusing error. The root is already represented by the root workspace, so the match is
+  dropped and the project resolves cleanly.
+
 ## 4.1.0 — 2026-06-20
 
 ### Added
diff --git a/spec/README.md b/spec/README.md
index 6ab93ab8..1f3875fc 100644
--- a/spec/README.md
+++ b/spec/README.md
@@ -1,6 +1,6 @@
 # Nadle Specification
 
-**Version**: 4.1.0
+**Version**: 4.1.1
 
 This directory contains the language-agnostic specification for Nadle, a type-safe,
 Gradle-inspired task runner for Node.js.