diff --git a/episodes/install.R b/episodes/install.R new file mode 100644 index 00000000..b889fdf9 --- /dev/null +++ b/episodes/install.R @@ -0,0 +1,11 @@ +pak::pak("knitr") +pak::pak("xml2") +pak::pak("lintr") +library(knitr) +opts_chunk$set(comment = "") +library(xml2) +x <- read_xml(" text ") +x +xml_name(x) +library(lintr) +available_tags(packages = "lintr") diff --git a/renv/activate.R b/renv/activate.R index ef25ef83..6cc343ac 100644 --- a/renv/activate.R +++ b/renv/activate.R @@ -2,8 +2,8 @@ local({ # the requested version of renv - version <- "1.1.7" - attr(version, "md5") <- "dd5d60f155dadff4c88c2fc6680504b4" + version <- "1.1.5" + attr(version, "md5") <- "afea6986e1bfb847731dfa8d463182c2" attr(version, "sha") <- NULL # the project directory @@ -226,13 +226,17 @@ local({ section <- header(sprintf("Bootstrapping renv %s", friendly)) catf(section) + # ensure the target library path exists; required for file.copy(..., recursive = TRUE) + dir.create(library, showWarnings = FALSE, recursive = TRUE) + # try to install renv from cache md5 <- attr(version, "md5", exact = TRUE) if (length(md5)) { pkgpath <- renv_bootstrap_find(version) if (length(pkgpath) && file.exists(pkgpath)) { - file.copy(pkgpath, library, recursive = TRUE) - return(invisible()) + ok <- file.copy(pkgpath, library, recursive = TRUE) + if (isTRUE(ok)) + return(invisible()) } } @@ -1231,6 +1235,21 @@ local({ } renv_bootstrap_run <- function(project, libpath, version) { + tryCatch( + renv_bootstrap_run_impl(project, libpath, version), + error = function(e) { + msg <- paste( + "failed to bootstrap renv: the project will not be loaded.", + paste("Reason:", conditionMessage(e)), + "Use `renv::activate()` to re-initialize the project.", + sep = "\n" + ) + warning(msg, call. = FALSE) + } + ) + } + + renv_bootstrap_run_impl <- function(project, libpath, version) { # perform bootstrap bootstrap(version, libpath) diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock index 922e15f4..d3fcd8d5 100644 --- a/renv/profiles/lesson-requirements/renv.lock +++ b/renv/profiles/lesson-requirements/renv.lock @@ -1,9 +1,13 @@ { "R": { - "Version": "4.5.2", + "Version": "4.6.0", "Repositories": [ { "Name": "CRAN", + "URL": "https://cran.rstudio.com" + }, + { + "Name": "RSPM", "URL": "https://packagemanager.posit.co/cran/latest" } ] @@ -24,8 +28,7 @@ "NeedsCompilation": "no", "Author": "Dirk Eddelbuettel [aut, cre] (ORCID: ), John W. Emerson [aut], Michael J. Kane [aut] (ORCID: )", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "DBI": { "Package": "DBI", @@ -191,10 +194,10 @@ }, "Matrix": { "Package": "Matrix", - "Version": "1.7-4", + "Version": "1.7-5", "Source": "Repository", "VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h", - "Date": "2025-08-27", + "Date": "2026-03-20", "Priority": "recommended", "Title": "Sparse and Dense Matrix Classes and Methods", "Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.", @@ -236,7 +239,7 @@ }, "QuickJSR": { "Package": "QuickJSR", - "Version": "1.9.0", + "Version": "1.10.0", "Source": "Repository", "Title": "Interface for the 'QuickJS-NG' Lightweight 'JavaScript' Engine", "Authors@R": "c( person(c(\"Andrew\", \"R.\"), \"Johnson\", , \"andrew.johnson@arjohnsonau.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7000-8065\")), person(\"QuickJS\", \"Authors\", role = c(\"cph\"), comment = \"QuickJS sources and headers\"), person(\"QuickJS-NG\", \"Authors\", role = c(\"cph\"), comment = \"QuickJS-NG sources and headers\") )", @@ -283,8 +286,7 @@ "URL": "https://github.com/HenrikBengtsson/R.methodsS3", "BugReports": "https://github.com/HenrikBengtsson/R.methodsS3/issues", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "R.oo": { "Package": "R.oo", @@ -311,8 +313,7 @@ "URL": "https://henrikbengtsson.github.io/R.oo/, https://github.com/HenrikBengtsson/R.oo", "BugReports": "https://github.com/HenrikBengtsson/R.oo/issues", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "R.utils": { "Package": "R.utils", @@ -342,8 +343,7 @@ "URL": "https://henrikbengtsson.github.io/R.utils/, https://github.com/HenrikBengtsson/R.utils", "BugReports": "https://github.com/HenrikBengtsson/R.utils/issues", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "R6": { "Package": "R6", @@ -386,15 +386,14 @@ "Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.", "License": "Apache License 2.0", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "Rcpp": { "Package": "Rcpp", - "Version": "1.1.1", + "Version": "1.1.1-1.1", "Source": "Repository", "Title": "Seamless R and C++ Integration", - "Date": "2026-01-07", + "Date": "2026-04-19", "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))", "Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at , the paper by Eddelbuettel and Francois (2011, ), the book by Eddelbuettel (2013, ) and the paper by Eddelbuettel and Balamuta (2018, ); see 'citation(\"Rcpp\")' for details.", "Depends": [ @@ -457,12 +456,11 @@ "NeedsCompilation": "yes", "Author": "Doug Bates [aut] (), Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Yixuan Qiu [aut] (), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "RcppParallel": { "Package": "RcppParallel", - "Version": "5.1.11-1", + "Version": "5.1.11-2", "Source": "Repository", "Type": "Package", "Title": "Parallel Programming Tools for 'Rcpp'", @@ -485,13 +483,13 @@ "RoxygenNote": "7.1.1", "Encoding": "UTF-8", "NeedsCompilation": "yes", - "Author": "JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, https://tinythreadpp.bitsnbites.eu/), Hamada S. Badr [ctb] (ORCID: ), Posit, PBC [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]", "Maintainer": "Kevin Ushey ", - "Repository": "CRAN" + "Author": "JJ Allaire [aut], Romain Francois [aut, cph], Kevin Ushey [aut, cre], Gregory Vandenbrouck [aut], Marcus Geelnard [aut, cph] (TinyThread library, https://tinythreadpp.bitsnbites.eu/), Hamada S. Badr [ctb] (ORCID: ), Posit, PBC [cph], Intel [aut, cph] (Intel TBB library, https://www.threadingbuildingblocks.org/), Microsoft [cph]", + "Repository": "RSPM" }, "S7": { "Package": "S7", - "Version": "0.2.1", + "Version": "0.2.2", "Source": "Repository", "Title": "An Object Oriented System Meant to Become a Successor to S3 and S4", "Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )", @@ -568,7 +566,7 @@ }, "V8": { "Package": "V8", - "Version": "8.0.1", + "Version": "8.2.0", "Source": "Repository", "Type": "Package", "Title": "Embedded JavaScript and WebAssembly Engine for R", @@ -621,8 +619,7 @@ "License": "MIT + file LICENSE", "NeedsCompilation": "no", "Author": "Tony Plate [aut, cre], Richard Heiberger [aut]", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "askpass": { "Package": "askpass", @@ -651,7 +648,7 @@ }, "backports": { "Package": "backports", - "Version": "1.5.0", + "Version": "1.5.1", "Source": "Repository", "Type": "Package", "Title": "Reimplementations of Functions Introduced Since R-3.0.0", @@ -667,8 +664,8 @@ "R (>= 3.0.0)" ], "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Author": "Michel Lang [cre, aut] (), Duncan Murdoch [aut], R Core Team [aut]", + "RoxygenNote": "7.3.3", + "Author": "Michel Lang [cre, aut] (ORCID: ), Duncan Murdoch [aut], R Core Team [aut]", "Repository": "CRAN" }, "base64enc": { @@ -690,8 +687,7 @@ "URL": "https://www.rforge.net/base64enc", "BugReports": "https://github.com/s-u/base64enc/issues", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "bigD": { "Package": "bigD", @@ -755,35 +751,37 @@ }, "bit64": { "Package": "bit64", - "Version": "4.6.0-1", + "Version": "4.8.2", "Source": "Repository", "Title": "A S3 Class for Vectors of 64bit Integers", - "Authors@R": "c( person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role = \"aut\"), person(\"Leonardo\", \"Silvestri\", role = \"ctb\"), person(\"Ofek\", \"Shilon\", role = \"ctb\") )", + "Authors@R": "c( person(\"Michael\", \"Chirico\", email=\"michaelchirico4@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Jens\", \"Oehlschlägel\", role=\"aut\"), person(\"Leonardo\", \"Silvestri\", role=\"ctb\"), person(\"Ofek\", \"Shilon\", role=\"ctb\"), person(\"Christian\", \"Ullerich\", role=\"ctb\") )", "Depends": [ - "R (>= 3.4.0)", - "bit (>= 4.0.0)" + "R (>= 3.5.0)" ], "Description": "Package 'bit64' provides serializable S3 atomic 64bit (signed) integers. These are useful for handling database keys and exact counting in +-2^63. WARNING: do not use them as replacement for 32bit integers, integer64 are not supported for subscripting by R-core and they have different semantics when combined with double, e.g. integer64 + double => integer64. Class integer64 can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as 'match' and 'order' support inter- active data exploration and manipulation and optionally leverage caching.", "License": "GPL-2 | GPL-3", "LazyLoad": "yes", "ByteCompile": "yes", - "URL": "https://github.com/r-lib/bit64", + "URL": "https://github.com/r-lib/bit64, https://bit64.r-lib.org", "Encoding": "UTF-8", "Imports": [ + "bit (>= 4.0.0)", "graphics", "methods", "stats", "utils" ], "Suggests": [ - "testthat (>= 3.0.3)", + "patrick (>= 0.3.0)", + "testthat (>= 3.3.0)", "withr" ], "Config/testthat/edition": "3", - "Config/needs/development": "testthat", - "RoxygenNote": "7.3.2", + "Config/Needs/development": "patrick, testthat", + "Config/Needs/website": "tidyverse/tidytemplate", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb]", + "Author": "Michael Chirico [aut, cre], Jens Oehlschlägel [aut], Leonardo Silvestri [ctb], Ofek Shilon [ctb], Christian Ullerich [ctb]", "Maintainer": "Michael Chirico ", "Repository": "CRAN" }, @@ -801,8 +799,7 @@ "NeedsCompilation": "yes", "Author": "Steve Dutky [aut] (S original; then (after MM's port) revised and modified), Martin Maechler [cre, aut] (Initial R port; tweaks, )", "Maintainer": "Martin Maechler ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "blob": { "Package": "blob", @@ -838,7 +835,7 @@ }, "broom": { "Package": "broom", - "Version": "1.0.12", + "Version": "1.0.13", "Source": "Repository", "Type": "Package", "Title": "Convert Statistical Objects into Tidy Tibbles", @@ -961,7 +958,7 @@ }, "bslib": { "Package": "bslib", - "Version": "0.10.0", + "Version": "0.11.0", "Source": "Repository", "Title": "Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'", "Authors@R": "c( person(\"Carson\", \"Sievert\", , \"carson@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", , \"joe@posit.co\", role = \"aut\"), person(\"Garrick\", \"Aden-Buie\", , \"garrick@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0002-7111-0077\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(, \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(, \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Javi\", \"Aguilar\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap colorpicker library\"), person(\"Thomas\", \"Park\", role = c(\"ctb\", \"cph\"), comment = \"Bootswatch library\"), person(, \"PayPal\", role = c(\"ctb\", \"cph\"), comment = \"Bootstrap accessibility plugin\") )", @@ -998,7 +995,7 @@ "magrittr", "rappdirs", "rmarkdown (>= 2.7)", - "shiny (>= 1.11.1)", + "shiny (>= 1.11.1.9000)", "testthat", "thematic", "tools", @@ -1009,12 +1006,12 @@ "Config/Needs/deploy": "BH, chiflights22, colourpicker, commonmark, cpp11, cpsievert/chiflights22, cpsievert/histoslider, dplyr, DT, ggplot2, ggridges, gt, hexbin, histoslider, htmlwidgets, lattice, leaflet, lubridate, markdown, modelr, plotly, reactable, reshape2, rprojroot, rsconnect, rstudio/shiny, scales, styler, tibble", "Config/Needs/routine": "chromote, desc, renv", "Config/Needs/website": "brio, crosstalk, dplyr, DT, ggplot2, glue, htmlwidgets, leaflet, lorem, palmerpenguins, plotly, purrr, rprojroot, rstudio/htmltools, scales, stringr, tidyr, webshot2", + "Config/roxygen2/version": "8.0.0", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "zzzz-bs-sass, fonts, zzz-precompile, theme-*, rmd-*", "Encoding": "UTF-8", - "RoxygenNote": "7.3.3", - "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-code-editor.R' 'input-dark-mode.R' 'input-submit.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'toast.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", + "Collate": "'accordion.R' 'breakpoints.R' 'bs-current-theme.R' 'bs-dependencies.R' 'bs-global.R' 'bs-remove.R' 'bs-theme-layers.R' 'bs-theme-preset-bootswatch.R' 'bs-theme-preset-brand.R' 'bs-theme-preset-builtin.R' 'bs-theme-preset.R' 'utils.R' 'bs-theme-preview.R' 'bs-theme-update.R' 'bs-theme.R' 'bslib-package.R' 'buttons.R' 'card.R' 'deprecated.R' 'files.R' 'fill.R' 'imports.R' 'input-code-editor.R' 'input-dark-mode.R' 'input-submit.R' 'input-switch.R' 'layout.R' 'nav-items.R' 'nav-update.R' 'navbar_options.R' 'navs-legacy.R' 'navs.R' 'onLoad.R' 'page.R' 'popover.R' 'precompiled.R' 'print.R' 'shiny-devmode.R' 'sidebar.R' 'staticimports.R' 'toast.R' 'toolbar.R' 'tooltip.R' 'utils-deps.R' 'utils-shiny.R' 'utils-tags.R' 'value-box.R' 'version-default.R' 'versions.R'", "NeedsCompilation": "no", "Author": "Carson Sievert [aut, cre] (ORCID: ), Joe Cheng [aut], Garrick Aden-Buie [aut] (ORCID: ), Posit Software, PBC [cph, fnd], Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Javi Aguilar [ctb, cph] (Bootstrap colorpicker library), Thomas Park [ctb, cph] (Bootswatch library), PayPal [ctb, cph] (Bootstrap accessibility plugin)", "Maintainer": "Carson Sievert ", @@ -1048,10 +1045,10 @@ }, "callr": { "Package": "callr", - "Version": "3.7.6", + "Version": "3.8.0", "Source": "Repository", "Title": "Call R from R", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", "Description": "It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all. This packages does exactly that.", "License": "MIT + file LICENSE", "URL": "https://callr.r-lib.org, https://github.com/r-lib/callr", @@ -1060,14 +1057,16 @@ "R (>= 3.4)" ], "Imports": [ + "otel (>= 0.2.0)", "processx (>= 3.6.1)", "R6", "utils" ], "Suggests": [ "asciicast (>= 2.3.1)", + "carrier", "cli (>= 1.1.0)", - "mockery", + "otelsdk (>= 0.2.0)", "ps", "rprojroot", "spelling", @@ -1076,11 +1075,12 @@ ], "Config/Needs/website": "r-lib/asciicast, glue, htmlwidgets, igraph, tibble, tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-28", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.1.9000", + "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "no", - "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre, cph] (ORCID: ), Winston Chang [aut], Posit Software, PBC [cph, fnd] (ROR: ), Ascent Digital Services [cph, fnd]", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -1113,12 +1113,11 @@ "NeedsCompilation": "no", "Author": "Jennifer Bryan [cre, aut], Hadley Wickham [ctb]", "Maintainer": "Jennifer Bryan ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "cffr": { "Package": "cffr", - "Version": "1.2.1", + "Version": "1.4.0", "Source": "Repository", "Title": "Generate Citation File Format ('cff') Metadata for R Packages", "Authors@R": "c( person(\"Diego\", \"Hernangómez\", , \"diego.hernangomezherrero@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-8457-4658\")), person(\"João\", \"Martins\", role = \"rev\", comment = c(ORCID = \"0000-0001-7961-4280\")), person(\"Scott\", \"Chamberlain\", role = \"rev\", comment = c(ORCID = \"0000-0003-1444-9135\")) )", @@ -1127,30 +1126,34 @@ "URL": "https://docs.ropensci.org/cffr/, https://github.com/ropensci/cffr", "BugReports": "https://github.com/ropensci/cffr/issues", "Depends": [ - "R (>= 4.0.0)" + "R (>= 4.1.0)" ], "Imports": [ "cli (>= 2.0.0)", "desc (>= 1.3.0)", "jsonlite (>= 1.7.2)", - "jsonvalidate (>= 1.1.0)", + "jsonvalidate (>= 1.5.0)", + "tools", + "utils", "yaml (>= 2.2.1)" ], "Suggests": [ "bibtex (>= 0.5.0)", "knitr", "lifecycle", + "quarto", "rmarkdown", "testthat (>= 3.0.0)", "usethis" ], - "VignetteBuilder": "knitr", + "VignetteBuilder": "quarto", "Config/Needs/website": "devtools", + "Config/roxygen2/markdown": "TRUE", + "Config/roxygen2/version": "8.0.0", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.3.3", "X-schema.org-isPartOf": "https://ropensci.org", "X-schema.org-keywords": "attribution, citation, credit, citation-files, cff, metadata, citation-file-format, cran, r, r-package, ropensci, rstats, r-cran", "NeedsCompilation": "no", @@ -1250,10 +1253,10 @@ }, "cli": { "Package": "cli", - "Version": "3.6.5", + "Version": "3.6.6", "Source": "Repository", "Title": "Helpers for Developing Command Line Interfaces", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"gabor@posit.co\", role = c(\"aut\", \"cre\")), person(\"Hadley\", \"Wickham\", role = \"ctb\"), person(\"Kirill\", \"Müller\", role = \"ctb\"), person(\"Salim\", \"Brüggemann\", , \"salim-b@pm.me\", role = \"ctb\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A suite of tools to build attractive command line interfaces ('CLIs'), from semantic elements: headings, lists, alerts, paragraphs, etc. Supports custom themes via a 'CSS'-like language. It also contains a number of lower level 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI colors and text styles as well.", "License": "MIT + file LICENSE", "URL": "https://cli.r-lib.org, https://github.com/r-lib/cli", @@ -1288,16 +1291,17 @@ ], "Config/Needs/website": "r-lib/asciicast, bench, brio, cpp11, decor, desc, fansi, prettyunits, sessioninfo, tidyverse/tidytemplate, usethis, vctrs", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.2.9000", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (), Posit Software, PBC [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre], Hadley Wickham [ctb], Kirill Müller [ctb], Salim Brüggemann [ctb] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "clipr": { "Package": "clipr", - "Version": "0.8.0", + "Version": "0.8.1", "Source": "Repository", "Type": "Package", "Title": "Read and Write from the System Clipboard", @@ -1319,13 +1323,30 @@ "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.1.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "xclip (https://github.com/astrand/xclip) or xsel (http://www.vergenet.net/~conrad/software/xsel/) for accessing the X11 clipboard, or wl-clipboard (https://github.com/bugaevc/wl-clipboard) for systems using Wayland.", "NeedsCompilation": "no", - "Author": "Matthew Lincoln [aut, cre] (), Louis Maddox [ctb], Steve Simpson [ctb], Jennifer Bryan [ctb]", + "Author": "Matthew Lincoln [aut, cre] (ORCID: ), Louis Maddox [ctb], Steve Simpson [ctb], Jennifer Bryan [ctb]", "Maintainer": "Matthew Lincoln ", "Repository": "CRAN" }, + "codetools": { + "Package": "codetools", + "Version": "0.2-20", + "Source": "Repository", + "Priority": "recommended", + "Author": "Luke Tierney ", + "Description": "Code analysis tools for R.", + "Title": "Code Analysis Tools for R", + "Depends": [ + "R (>= 2.1)" + ], + "Maintainer": "Luke Tierney ", + "URL": "https://gitlab.com/luke-tierney/codetools", + "License": "GPL", + "NeedsCompilation": "no", + "Repository": "CRAN" + }, "commonmark": { "Package": "commonmark", "Version": "2.0.0", @@ -1389,7 +1410,7 @@ }, "countrycode": { "Package": "countrycode", - "Version": "1.7.0", + "Version": "1.8.0", "Source": "Repository", "Type": "Package", "Title": "Convert Country Names and Country Codes", @@ -1470,7 +1491,7 @@ }, "cpp11": { "Package": "cpp11", - "Version": "0.5.3", + "Version": "0.5.5", "Source": "Repository", "Title": "A C++11 Interface for R's C Interface", "Authors@R": "c( person(\"Davis\", \"Vaughan\", email = \"davis@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4777-038X\")), person(\"Jim\",\"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Romain\", \"François\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Benjamin\", \"Kietzman\", role = \"ctb\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -1509,7 +1530,7 @@ "Config/testthat/edition": "3", "Config/Needs/cpp11/cpp_register": "brio, cli, decor, desc, glue, tibble, vctrs", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Author": "Davis Vaughan [aut, cre] (ORCID: ), Jim Hester [aut] (ORCID: ), Romain François [aut] (ORCID: ), Benjamin Kietzman [ctb], Posit Software, PBC [cph, fnd]", "Maintainer": "Davis Vaughan ", @@ -1579,7 +1600,7 @@ }, "curl": { "Package": "curl", - "Version": "7.0.0", + "Version": "7.1.0", "Source": "Repository", "Type": "Package", "Title": "A Modern and Flexible Web Client for R", @@ -1613,7 +1634,7 @@ }, "data.table": { "Package": "data.table", - "Version": "1.18.2.1", + "Version": "1.18.4", "Source": "Repository", "Title": "Extension of `data.frame`", "Depends": [ @@ -1639,9 +1660,9 @@ "VignetteBuilder": "knitr", "Encoding": "UTF-8", "ByteCompile": "TRUE", - "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\", email=\"j.gorecki@wit.edu.pl\"), person(\"Michael\",\"Chirico\", role=\"aut\", email=\"michaelchirico4@gmail.com\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\", role=\"aut\", email=\"toby.hocking@r-project.org\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", \"Krylov\", role=\"aut\", email=\"ikrylov@disroot.org\", comment = c(ORCID=\"0000-0002-0172-3812\")), person(\"Pasha\",\"Stetsenko\", role=\"ctb\"), person(\"Tom\",\"Short\", role=\"ctb\"), person(\"Steve\",\"Lianoglou\", role=\"ctb\"), person(\"Eduard\",\"Antonyan\", role=\"ctb\"), person(\"Markus\",\"Bonsch\", role=\"ctb\"), person(\"Hugh\",\"Parsonage\", role=\"ctb\"), person(\"Scott\",\"Ritchie\", role=\"ctb\"), person(\"Kun\",\"Ren\", role=\"ctb\"), person(\"Xianying\",\"Tan\", role=\"ctb\"), person(\"Rick\",\"Saporta\", role=\"ctb\"), person(\"Otto\",\"Seiskari\", role=\"ctb\"), person(\"Xianghui\",\"Dong\", role=\"ctb\"), person(\"Michel\",\"Lang\", role=\"ctb\"), person(\"Watal\",\"Iwasaki\", role=\"ctb\"), person(\"Seth\",\"Wenchel\", role=\"ctb\"), person(\"Karl\",\"Broman\", role=\"ctb\"), person(\"Tobias\",\"Schmidt\", role=\"ctb\"), person(\"David\",\"Arenburg\", role=\"ctb\"), person(\"Ethan\",\"Smith\", role=\"ctb\"), person(\"Francois\",\"Cocquemas\", role=\"ctb\"), person(\"Matthieu\",\"Gomez\", role=\"ctb\"), person(\"Philippe\",\"Chataignon\", role=\"ctb\"), person(\"Nello\",\"Blaser\", role=\"ctb\"), person(\"Dmitry\",\"Selivanov\", role=\"ctb\"), person(\"Andrey\",\"Riabushenko\", role=\"ctb\"), person(\"Cheng\",\"Lee\", 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person(\"Elliott\",\"Sales de Andrade\", role=\"ctb\"), person(\"Cole\",\"Miller\", role=\"ctb\"), person(\"Jens Peder\",\"Meldgaard\", role=\"ctb\"), person(\"Vaclav\",\"Tlapak\", role=\"ctb\"), person(\"Kevin\",\"Ushey\", role=\"ctb\"), person(\"Dirk\",\"Eddelbuettel\", role=\"ctb\"), person(\"Tony\",\"Fischetti\", role=\"ctb\"), person(\"Ofek\",\"Shilon\", role=\"ctb\"), person(\"Vadim\",\"Khotilovich\", role=\"ctb\"), person(\"Hadley\",\"Wickham\", role=\"ctb\"), person(\"Bennet\",\"Becker\", role=\"ctb\"), person(\"Kyle\",\"Haynes\", role=\"ctb\"), person(\"Boniface Christian\",\"Kamgang\", role=\"ctb\"), person(\"Olivier\",\"Delmarcell\", role=\"ctb\"), person(\"Josh\",\"O'Brien\", role=\"ctb\"), person(\"Dereck\",\"de Mezquita\", role=\"ctb\"), person(\"Michael\",\"Czekanski\", role=\"ctb\"), person(\"Dmitry\", \"Shemetov\", role=\"ctb\"), person(\"Nitish\", \"Jha\", role=\"ctb\"), person(\"Joshua\", \"Wu\", role=\"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role=\"ctb\"), person(\"Anirban\", \"Chetia\", role=\"ctb\"), person(\"Doris\", \"Amoakohene\", role=\"ctb\"), person(\"Angel\", \"Feliz\", role=\"ctb\"), person(\"Michael\",\"Young\", role=\"ctb\"), person(\"Mark\", \"Seeto\", role=\"ctb\"), person(\"Philippe\", \"Grosjean\", role=\"ctb\"), person(\"Vincent\", \"Runge\", role=\"ctb\"), person(\"Christian\", \"Wia\", role=\"ctb\"), person(\"Elise\", \"Maigné\", role=\"ctb\"), person(\"Vincent\", \"Rocher\", role=\"ctb\"), person(\"Vijay\", \"Lulla\", role=\"ctb\"), person(\"Aljaž\", \"Sluga\", role=\"ctb\"), person(\"Bill\", \"Evans\", role=\"ctb\"), person(\"Reino\", \"Bruner\", role=\"ctb\"), person(given=\"@badasahog\", role=\"ctb\", comment=\"GitHub user\"), person(\"Vinit\", \"Thakur\", role=\"ctb\"), person(\"Mukul\", \"Kumar\", role=\"ctb\"), person(\"Ildikó\", \"Czeller\", role=\"ctb\"), person(\"Manmita\", \"Das\", role=\"ctb\") )", + "Authors@R": "c( person(\"Tyson\",\"Barrett\", role=c(\"aut\",\"cre\"), email=\"t.barrett88@gmail.com\", comment = c(ORCID=\"0000-0002-2137-1391\")), person(\"Matt\",\"Dowle\", role=\"aut\", email=\"mattjdowle@gmail.com\"), person(\"Arun\",\"Srinivasan\", role=\"aut\", email=\"asrini@pm.me\"), person(\"Jan\",\"Gorecki\", role=\"aut\", email=\"j.gorecki@wit.edu.pl\"), person(\"Michael\",\"Chirico\", role=\"aut\", email=\"michaelchirico4@gmail.com\", comment = c(ORCID=\"0000-0003-0787-087X\")), person(\"Toby\",\"Hocking\", role=\"aut\", email=\"toby.hocking@r-project.org\", comment = c(ORCID=\"0000-0002-3146-0865\")), person(\"Benjamin\",\"Schwendinger\",role=\"aut\", comment = c(ORCID=\"0000-0003-3315-8114\")), person(\"Ivan\", \"Krylov\", role=\"aut\", email=\"ikrylov@disroot.org\", comment = c(ORCID=\"0000-0002-0172-3812\")), person(\"Pasha\",\"Stetsenko\", role=\"ctb\"), person(\"Tom\",\"Short\", role=\"ctb\"), person(\"Steve\",\"Lianoglou\", role=\"ctb\"), person(\"Eduard\",\"Antonyan\", role=\"ctb\"), person(\"Markus\",\"Bonsch\", role=\"ctb\"), person(\"Hugh\",\"Parsonage\", role=\"ctb\"), person(\"Scott\",\"Ritchie\", role=\"ctb\"), person(\"Kun\",\"Ren\", role=\"ctb\"), person(\"Xianying\",\"Tan\", role=\"ctb\"), person(\"Rick\",\"Saporta\", role=\"ctb\"), person(\"Otto\",\"Seiskari\", role=\"ctb\"), person(\"Xianghui\",\"Dong\", role=\"ctb\"), person(\"Michel\",\"Lang\", role=\"ctb\"), person(\"Watal\",\"Iwasaki\", role=\"ctb\"), person(\"Seth\",\"Wenchel\", role=\"ctb\"), person(\"Karl\",\"Broman\", role=\"ctb\"), person(\"Tobias\",\"Schmidt\", role=\"ctb\"), person(\"David\",\"Arenburg\", role=\"ctb\"), person(\"Ethan\",\"Smith\", role=\"ctb\"), person(\"Francois\",\"Cocquemas\", role=\"ctb\"), person(\"Matthieu\",\"Gomez\", role=\"ctb\"), person(\"Philippe\",\"Chataignon\", role=\"ctb\"), person(\"Nello\",\"Blaser\", role=\"ctb\"), person(\"Dmitry\",\"Selivanov\", role=\"ctb\"), person(\"Andrey\",\"Riabushenko\", role=\"ctb\"), person(\"Cheng\",\"Lee\", role=\"ctb\"), person(\"Declan\",\"Groves\", role=\"ctb\"), person(\"Daniel\",\"Possenriede\", role=\"ctb\"), person(\"Felipe\",\"Parages\", role=\"ctb\"), person(\"Denes\",\"Toth\", role=\"ctb\"), person(\"Mus\",\"Yaramaz-David\", role=\"ctb\"), person(\"Ayappan\",\"Perumal\", role=\"ctb\"), person(\"James\",\"Sams\", role=\"ctb\"), person(\"Martin\",\"Morgan\", role=\"ctb\"), person(\"Michael\",\"Quinn\", role=\"ctb\"), person(given=\"@javrucebo\", role=\"ctb\", comment=\"GitHub user\"), person(\"Marc\",\"Halperin\", role=\"ctb\"), person(\"Roy\",\"Storey\", role=\"ctb\"), person(\"Manish\",\"Saraswat\", role=\"ctb\"), person(\"Morgan\",\"Jacob\", role=\"ctb\"), person(\"Michael\",\"Schubmehl\", role=\"ctb\"), person(\"Davis\",\"Vaughan\", role=\"ctb\"), person(\"Leonardo\",\"Silvestri\", role=\"ctb\"), person(\"Jim\",\"Hester\", role=\"ctb\"), person(\"Anthony\",\"Damico\", role=\"ctb\"), person(\"Sebastian\",\"Freundt\", role=\"ctb\"), person(\"David\",\"Simons\", role=\"ctb\"), person(\"Elliott\",\"Sales de Andrade\", role=\"ctb\"), person(\"Cole\",\"Miller\", role=\"ctb\"), person(\"Jens Peder\",\"Meldgaard\", role=\"ctb\"), person(\"Vaclav\",\"Tlapak\", role=\"ctb\"), person(\"Kevin\",\"Ushey\", role=\"ctb\"), person(\"Dirk\",\"Eddelbuettel\", role=\"ctb\"), person(\"Tony\",\"Fischetti\", role=\"ctb\"), person(\"Ofek\",\"Shilon\", role=\"ctb\"), person(\"Vadim\",\"Khotilovich\", role=\"ctb\"), person(\"Hadley\",\"Wickham\", role=\"ctb\"), person(\"Bennet\",\"Becker\", role=\"ctb\"), person(\"Kyle\",\"Haynes\", role=\"ctb\"), person(\"Boniface Christian\",\"Kamgang\", role=\"ctb\"), person(\"Olivier\",\"Delmarcell\", role=\"ctb\"), person(\"Josh\",\"O'Brien\", role=\"ctb\"), person(\"Dereck\",\"de Mezquita\", role=\"ctb\"), person(\"Michael\",\"Czekanski\", role=\"ctb\"), person(\"Dmitry\", \"Shemetov\", role=\"ctb\"), person(\"Nitish\", \"Jha\", role=\"ctb\"), person(\"Joshua\", \"Wu\", role=\"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role=\"ctb\"), person(\"Anirban\", \"Chetia\", role=\"ctb\"), person(\"Doris\", \"Amoakohene\", role=\"ctb\"), person(\"Angel\", \"Feliz\", role=\"ctb\"), person(\"Michael\",\"Young\", role=\"ctb\"), person(\"Mark\", \"Seeto\", role=\"ctb\"), person(\"Philippe\", \"Grosjean\", role=\"ctb\"), person(\"Vincent\", \"Runge\", role=\"ctb\"), person(\"Christian\", \"Wia\", role=\"ctb\"), person(\"Elise\", \"Maigné\", role=\"ctb\"), person(\"Vincent\", \"Rocher\", role=\"ctb\"), person(\"Vijay\", \"Lulla\", role=\"ctb\"), person(\"Aljaž\", \"Sluga\", role=\"ctb\"), person(\"Bill\", \"Evans\", role=\"ctb\"), person(\"Reino\", \"Bruner\", role=\"ctb\"), person(given=\"@badasahog\", role=\"ctb\", comment=\"GitHub user\"), person(\"Vinit\", \"Thakur\", role=\"ctb\"), person(\"Mukul\", \"Kumar\", role=\"ctb\"), person(\"Ildikó\", \"Czeller\", role=\"ctb\"), person(\"Manmita\", \"Das\", role=\"ctb\"), person(\"Tarun\", \"Thammisetty\", role=\"ctb\") )", "NeedsCompilation": "yes", - "Author": "Tyson Barrett [aut, cre] (ORCID: ), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildikó Czeller [ctb], Manmita Das [ctb]", + "Author": "Tyson Barrett [aut, cre] (ORCID: ), Matt Dowle [aut], Arun Srinivasan [aut], Jan Gorecki [aut], Michael Chirico [aut] (ORCID: ), Toby Hocking [aut] (ORCID: ), Benjamin Schwendinger [aut] (ORCID: ), Ivan Krylov [aut] (ORCID: ), Pasha Stetsenko [ctb], Tom Short [ctb], Steve Lianoglou [ctb], Eduard Antonyan [ctb], Markus Bonsch [ctb], Hugh Parsonage [ctb], Scott Ritchie [ctb], Kun Ren [ctb], Xianying Tan [ctb], Rick Saporta [ctb], Otto Seiskari [ctb], Xianghui Dong [ctb], Michel Lang [ctb], Watal Iwasaki [ctb], Seth Wenchel [ctb], Karl Broman [ctb], Tobias Schmidt [ctb], David Arenburg [ctb], Ethan Smith [ctb], Francois Cocquemas [ctb], Matthieu Gomez [ctb], Philippe Chataignon [ctb], Nello Blaser [ctb], Dmitry Selivanov [ctb], Andrey Riabushenko [ctb], Cheng Lee [ctb], Declan Groves [ctb], Daniel Possenriede [ctb], Felipe Parages [ctb], Denes Toth [ctb], Mus Yaramaz-David [ctb], Ayappan Perumal [ctb], James Sams [ctb], Martin Morgan [ctb], Michael Quinn [ctb], @javrucebo [ctb] (GitHub user), Marc Halperin [ctb], Roy Storey [ctb], Manish Saraswat [ctb], Morgan Jacob [ctb], Michael Schubmehl [ctb], Davis Vaughan [ctb], Leonardo Silvestri [ctb], Jim Hester [ctb], Anthony Damico [ctb], Sebastian Freundt [ctb], David Simons [ctb], Elliott Sales de Andrade [ctb], Cole Miller [ctb], Jens Peder Meldgaard [ctb], Vaclav Tlapak [ctb], Kevin Ushey [ctb], Dirk Eddelbuettel [ctb], Tony Fischetti [ctb], Ofek Shilon [ctb], Vadim Khotilovich [ctb], Hadley Wickham [ctb], Bennet Becker [ctb], Kyle Haynes [ctb], Boniface Christian Kamgang [ctb], Olivier Delmarcell [ctb], Josh O'Brien [ctb], Dereck de Mezquita [ctb], Michael Czekanski [ctb], Dmitry Shemetov [ctb], Nitish Jha [ctb], Joshua Wu [ctb], Iago Giné-Vázquez [ctb], Anirban Chetia [ctb], Doris Amoakohene [ctb], Angel Feliz [ctb], Michael Young [ctb], Mark Seeto [ctb], Philippe Grosjean [ctb], Vincent Runge [ctb], Christian Wia [ctb], Elise Maigné [ctb], Vincent Rocher [ctb], Vijay Lulla [ctb], Aljaž Sluga [ctb], Bill Evans [ctb], Reino Bruner [ctb], @badasahog [ctb] (GitHub user), Vinit Thakur [ctb], Mukul Kumar [ctb], Ildikó Czeller [ctb], Manmita Das [ctb], Tarun Thammisetty [ctb]", "Maintainer": "Tyson Barrett ", "Repository": "CRAN" }, @@ -1794,12 +1815,11 @@ "NeedsCompilation": "no", "Author": "Steph Locke [cre], Rich FitzJohn [aut], Anne Cori [aut], Thibaut Jombart [aut]", "Maintainer": "Steph Locke ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "distributional": { "Package": "distributional", - "Version": "0.6.0", + "Version": "0.7.0", "Source": "Repository", "Title": "Vectorised Probability Distributions", "Authors@R": "c(person(given = \"Mitchell\", family = \"O'Hara-Wild\", role = c(\"aut\", \"cre\"), email = \"mail@mitchelloharawild.com\", comment = c(ORCID = \"0000-0001-6729-7695\")), person(given = \"Matthew\", family = \"Kay\", role = c(\"aut\"), comment = c(ORCID = \"0000-0001-9446-0419\")), person(given = \"Alex\", family = \"Hayes\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-4985-5160\")), person(given = \"Rob\", family = \"Hyndman\", role = c(\"aut\"), comment = c(ORCID = \"0000-0002-2140-5352\")), person(given = \"Earo\", family = \"Wang\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0001-6448-5260\")), person(given = \"Vencislav\", family = \"Popov\", role = c(\"ctb\"), comment = c(ORCID = \"0000-0002-8073-4199\")))", @@ -1827,6 +1847,7 @@ "ggdist", "ggplot2", "gk", + "LaplacesDemon", "pkgdown" ], "RdMacros": "lifecycle", @@ -1842,7 +1863,7 @@ }, "dplyr": { "Package": "dplyr", - "Version": "1.2.0", + "Version": "1.2.1", "Source": "Repository", "Type": "Package", "Title": "A Grammar of Data Manipulation", @@ -2367,16 +2388,16 @@ }, "fs": { "Package": "fs", - "Version": "1.6.6", + "Version": "2.1.0", "Source": "Repository", "Title": "Cross-Platform File System Operations Based on 'libuv'", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroenooms@gmail.com\", role = \"cre\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.", "License": "MIT + file LICENSE", "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs", "BugReports": "https://github.com/r-lib/fs/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -2394,17 +2415,17 @@ "withr" ], "VignetteBuilder": "knitr", - "ByteCompile": "true", + "SystemRequirements": "libuv: libuv-devel (rpm) or libuv1-dev (deb). Alternatively to build the vendored libuv 'cmake' is required. GNU make.", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", "Copyright": "file COPYRIGHTS", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", - "SystemRequirements": "GNU make", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]", - "Maintainer": "Gábor Csárdi ", + "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "futile.logger": { @@ -2441,8 +2462,7 @@ "RoxygenNote": "7.1.2", "URL": "https://github.com/zatonovo/futile.logger", "Author": "Brian Lee Yung Rowe [aut, cre]", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "futile.options": { "Package": "futile.options", @@ -2460,8 +2480,7 @@ "License": "LGPL-3", "LazyLoad": "yes", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "gargle": { "Package": "gargle", @@ -2546,7 +2565,7 @@ }, "ggplot2": { "Package": "ggplot2", - "Version": "4.0.2", + "Version": "4.0.3", "Source": "Repository", "Title": "Create Elegant Data Visualisations Using the Grammar of Graphics", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Winston\", \"Chang\", role = \"aut\", comment = c(ORCID = \"0000-0002-1576-2126\")), person(\"Lionel\", \"Henry\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Kohske\", \"Takahashi\", role = \"aut\"), person(\"Claus\", \"Wilke\", role = \"aut\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(\"Kara\", \"Woo\", role = \"aut\", comment = c(ORCID = \"0000-0002-5125-4188\")), person(\"Hiroaki\", \"Yutani\", role = \"aut\", comment = c(ORCID = \"0000-0002-3385-7233\")), person(\"Dewey\", \"Dunnington\", role = \"aut\", comment = c(ORCID = \"0000-0002-9415-4582\")), person(\"Teun\", \"van den Brand\", role = \"aut\", comment = c(ORCID = \"0000-0002-9335-7468\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -2619,16 +2638,16 @@ }, "glue": { "Package": "glue", - "Version": "1.8.0", + "Version": "1.8.1", "Source": "Repository", "Title": "Interpreted String Literals", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "An implementation of interpreted string literals, inspired by Python's Literal String Interpolation and Docstrings and Julia's Triple-Quoted String Literals .", "License": "MIT + file LICENSE", "URL": "https://glue.tidyverse.org/, https://github.com/tidyverse/glue", "BugReports": "https://github.com/tidyverse/glue/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -2638,7 +2657,6 @@ "DBI (>= 1.2.0)", "dplyr", "knitr", - "magrittr", "rlang", "rmarkdown", "RSQLite", @@ -2651,10 +2669,11 @@ "ByteCompile": "true", "Config/Needs/website": "bench, forcats, ggbeeswarm, ggplot2, R.utils, rprintf, tidyr, tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2026-04-16", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut] (), Jennifer Bryan [aut, cre] (), Posit Software, PBC [cph, fnd]", + "Author": "Jim Hester [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, @@ -2759,7 +2778,7 @@ }, "grates": { "Package": "grates", - "Version": "1.7.2", + "Version": "1.8.0", "Source": "Repository", "Title": "Grouped Date Classes", "Authors@R": "c( person( given = \"Tim\", family = \"Taylor\", role = c(\"aut\", \"cre\"), email = \"tim.taylor@hiddenelephants.co.uk\", comment = c(ORCID = \"0000-0002-8587-7113\") ) )", @@ -2822,8 +2841,7 @@ "NeedsCompilation": "no", "Author": "Baptiste Auguie [aut, cre], Anton Antonov [ctb]", "Maintainer": "Baptiste Auguie ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "gt": { "Package": "gt", @@ -2987,7 +3005,7 @@ }, "highr": { "Package": "highr", - "Version": "0.11", + "Version": "0.12", "Source": "Repository", "Type": "Package", "Title": "Syntax Highlighting for R Source Code", @@ -3009,9 +3027,9 @@ "BugReports": "https://github.com/yihui/highr/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", + "Author": "Yihui Xie [aut, cre] (ORCID: ), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, @@ -3190,15 +3208,14 @@ "NeedsCompilation": "no", "Author": "Rich FitzJohn [aut, cre]", "Maintainer": "Rich FitzJohn ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "igraph": { "Package": "igraph", - "Version": "2.2.2", + "Version": "2.3.2", "Source": "Repository", "Title": "Network Analysis and Visualization", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Maëlle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Tamás\", \"Nepusz\", , \"ntamas@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-1451-338X\")), person(\"Vincent\", \"Traag\", role = \"aut\", comment = c(ORCID = \"0000-0003-3170-3879\")), person(\"Szabolcs\", \"Horvát\", , \"szhorvat@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-3100-523X\")), person(\"Fabio\", \"Zanini\", , \"fabio.zanini@unsw.edu.au\", role = \"aut\", comment = c(ORCID = \"0000-0001-7097-8539\")), person(\"Daniel\", \"Noom\", role = \"aut\"), person(\"Kirill\", \"Müller\", , \"kirill@cynkra.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-1416-3412\")), person(\"Michael\", \"Antonov\", role = \"ctb\"), person(\"Chan Zuckerberg Initiative\", role = \"fnd\", comment = c(ROR = \"02qenvm24\")), person(\"David\", \"Schoch\", , \"david.schoch@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-2952-4812\")), person(\"Maëlle\", \"Salmon\", , \"maelle@cynkra.com\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"R Consortium\", role = \"fnd\", comment = c(ROR = \"01z833950\")) )", "Description": "Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.", "License": "GPL (>= 2)", "URL": "https://r.igraph.org/, https://igraph.org/, https://igraph.discourse.group/", @@ -3246,8 +3263,9 @@ "Config/build/compilation-database": "false", "Config/build/never-clean": "true", "Config/comment/compilation-database": "Generate manually with pkgload:::generate_db() for faster pkgload::load_all()", - "Config/Needs/build": "r-lib/roxygen2, devtools, irlba, pkgconfig, igraph/igraph.r2cdocs, moodymudskipper/devtag", + "Config/Needs/build": "devtools, irlba, pkgconfig", "Config/Needs/coverage": "covr", + "Config/Needs/roxygen2": "r-lib/roxygen2, igraph/igraph.r2cdocs, moodymudskipper/devtag", "Config/Needs/website": "here, readr, tibble, xmlparsedata, xml2", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", @@ -3256,13 +3274,13 @@ "RoxygenNote": "7.3.3.9000", "SystemRequirements": "libxml2 (optional), glpk (>= 4.57, optional)", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut] (ORCID: ), Tamás Nepusz [aut] (ORCID: ), Vincent Traag [aut] (ORCID: ), Szabolcs Horvát [aut] (ORCID: ), Fabio Zanini [aut] (ORCID: ), Daniel Noom [aut], Kirill Müller [aut, cre] (ORCID: ), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: ), David Schoch [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: )", + "Author": "Gábor Csárdi [aut] (ORCID: ), Tamás Nepusz [aut] (ORCID: ), Vincent Traag [aut] (ORCID: ), Szabolcs Horvát [aut] (ORCID: ), Fabio Zanini [aut] (ORCID: ), Daniel Noom [aut], Kirill Müller [aut, cre] (ORCID: ), Michael Antonov [ctb], Chan Zuckerberg Initiative [fnd] (ROR: ), David Schoch [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: ), R Consortium [fnd] (ROR: )", "Maintainer": "Kirill Müller ", "Repository": "CRAN" }, "incidence2": { "Package": "incidence2", - "Version": "2.6.3", + "Version": "2.6.4", "Source": "Repository", "Type": "Package", "Title": "Compute, Handle and Plot Incidence of Dated Events", @@ -3290,7 +3308,7 @@ "vctrs", "ympes (>= 1.3.0)" ], - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Suggests": [ "outbreaks", "ggplot2", @@ -3334,8 +3352,7 @@ "NeedsCompilation": "no", "Author": "Oleg Sklyar [aut], Dirk Eddelbuettel [aut, cre] (), Romain Francois [aut] (), Mike Smith [ctb], Duncan Murdoch [ctb], Karline Soetaert [ctb] (), Johannes Ranke [ctb] ()", "Maintainer": "Dirk Eddelbuettel ", - "Repository": "RSPM", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "isoband": { "Package": "isoband", @@ -3568,8 +3585,7 @@ "stats", "graphics" ], - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "lambda.r": { "Package": "lambda.r", @@ -3593,8 +3609,7 @@ "License": "LGPL-3", "LazyLoad": "yes", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "latex2exp": { "Package": "latex2exp", @@ -3669,21 +3684,22 @@ "NeedsCompilation": "yes", "Author": "Deepayan Sarkar [aut, cre] (ORCID: ), Felix Andrews [ctb], Kevin Wright [ctb] (documentation), Neil Klepeis [ctb], Johan Larsson [ctb] (miscellaneous improvements), Zhijian (Jason) Wen [cph] (filled contour code), Paul Murrell [ctb], Stefan Eng [ctb] (violin plot improvements), Achim Zeileis [ctb] (modern colors), Alexandre Courtiol [ctb] (generics for larrows, lpolygon, lrect and lsegments)", "Maintainer": "Deepayan Sarkar ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "lazyeval": { "Package": "lazyeval", - "Version": "0.2.2", + "Version": "0.2.3", "Source": "Repository", "Title": "Lazy (Non-Standard) Evaluation", "Description": "An alternative approach to non-standard evaluation using formulas. Provides a full implementation of LISP style 'quasiquotation', making it easier to generate code with other code.", "Authors@R": "c( person(\"Hadley\", \"Wickham\", ,\"hadley@rstudio.com\", c(\"aut\", \"cre\")), person(\"RStudio\", role = \"cph\") )", "License": "GPL-3", - "LazyData": "true", "Depends": [ "R (>= 3.1.0)" ], + "Imports": [ + "rlang" + ], "Suggests": [ "knitr", "rmarkdown (>= 0.2.65)", @@ -3691,12 +3707,12 @@ "covr" ], "VignetteBuilder": "knitr", - "RoxygenNote": "6.1.1", + "RoxygenNote": "7.3.3", + "Config/build/compilation-database": "true", "NeedsCompilation": "yes", "Author": "Hadley Wickham [aut, cre], RStudio [cph]", "Maintainer": "Hadley Wickham ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "lifecycle": { "Package": "lifecycle", @@ -3738,6 +3754,62 @@ "Maintainer": "Lionel Henry ", "Repository": "CRAN" }, + "lintr": { + "Package": "lintr", + "Version": "3.3.0-1", + "Source": "Repository", + "Title": "A 'Linter' for R Code", + "Authors@R": "c( person(\"Jim\", \"Hester\", , role = \"aut\"), person(\"Florent\", \"Angly\", role = \"aut\", comment = c(GitHub = \"fangly\")), person(\"Russ\", \"Hyde\", role = \"aut\"), person(\"Michael\", \"Chirico\", email = \"michaelchirico4@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0787-087X\")), person(\"Kun\", \"Ren\", role = \"aut\"), person(\"Alexander\", \"Rosenstock\", role = \"aut\", comment = c(GitHub = \"AshesITR\")), person(\"Indrajeet\", \"Patil\", email = \"patilindrajeet.science@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(\"Hugo\", \"Gruson\", role = \"aut\", comment = c(ORCID = \"0000-0002-4094-1476\")) )", + "Description": "Checks adherence to a given style, syntax errors and possible semantic issues. Supports on the fly checking of R code edited with 'RStudio IDE', 'Emacs', 'Vim', 'Sublime Text', 'Atom' and 'Visual Studio Code'.", + "License": "MIT + file LICENSE", + "URL": "https://lintr.r-lib.org, https://github.com/r-lib/lintr", + "BugReports": "https://github.com/r-lib/lintr/issues", + "Depends": [ + "R (>= 4.0)" + ], + "Imports": [ + "backports (>= 1.5.0)", + "cli (>= 3.4.0)", + "codetools", + "digest", + "glue", + "knitr", + "rex", + "stats", + "utils", + "xfun", + "xml2 (>= 1.0.0)", + "xmlparsedata (>= 1.0.5)" + ], + "Suggests": [ + "bookdown", + "cyclocomp", + "jsonlite", + "patrick (>= 0.2.0)", + "rlang", + "rmarkdown", + "rstudioapi (>= 0.2)", + "testthat (>= 3.2.1)", + "tibble", + "tufte", + "withr (>= 2.5.0)" + ], + "Enhances": [ + "data.table" + ], + "VignetteBuilder": "knitr", + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/Needs/development": "pkgload, testthat, patrick", + "Config/testthat/edition": "3", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "Collate": "'make_linter_from_xpath.R' 'xp_utils.R' 'utils.R' 'AAA.R' 'T_and_F_symbol_linter.R' 'absolute_path_linter.R' 'actions.R' 'addins.R' 'all_equal_linter.R' 'any_duplicated_linter.R' 'any_is_na_linter.R' 'assignment_linter.R' 'backport_linter.R' 'boolean_arithmetic_linter.R' 'brace_linter.R' 'cache.R' 'class_equals_linter.R' 'coalesce_linter.R' 'commas_linter.R' 'commented_code_linter.R' 'comparison_negation_linter.R' 'condition_call_linter.R' 'condition_message_linter.R' 'conjunct_test_linter.R' 'consecutive_assertion_linter.R' 'consecutive_mutate_linter.R' 'cyclocomp_linter.R' 'declared_functions.R' 'deprecated.R' 'download_file_linter.R' 'duplicate_argument_linter.R' 'empty_assignment_linter.R' 'equals_na_linter.R' 'exclude.R' 'expect_comparison_linter.R' 'expect_identical_linter.R' 'expect_length_linter.R' 'expect_lint.R' 'expect_named_linter.R' 'expect_not_linter.R' 'expect_null_linter.R' 'expect_s3_class_linter.R' 'expect_s4_class_linter.R' 'expect_true_false_linter.R' 'expect_type_linter.R' 'extract.R' 'fixed_regex_linter.R' 'for_loop_index_linter.R' 'function_argument_linter.R' 'function_left_parentheses_linter.R' 'function_return_linter.R' 'get_source_expressions.R' 'ids_with_token.R' 'if_not_else_linter.R' 'if_switch_linter.R' 'ifelse_censor_linter.R' 'implicit_assignment_linter.R' 'implicit_integer_linter.R' 'indentation_linter.R' 'infix_spaces_linter.R' 'inner_combine_linter.R' 'is_lint_level.R' 'is_numeric_linter.R' 'keyword_quote_linter.R' 'length_levels_linter.R' 'length_test_linter.R' 'lengths_linter.R' 'library_call_linter.R' 'line_length_linter.R' 'lint.R' 'linter_tag_docs.R' 'linter_tags.R' 'lintr-deprecated.R' 'lintr-package.R' 'list2df_linter.R' 'list_comparison_linter.R' 'literal_coercion_linter.R' 'make_linter_from_regex.R' 'matrix_apply_linter.R' 'methods.R' 'missing_argument_linter.R' 'missing_package_linter.R' 'namespace.R' 'namespace_linter.R' 'nested_ifelse_linter.R' 'nested_pipe_linter.R' 'nonportable_path_linter.R' 'shared_constants.R' 'nrow_subset_linter.R' 'numeric_leading_zero_linter.R' 'nzchar_linter.R' 'object_length_linter.R' 'object_name_linter.R' 'object_overwrite_linter.R' 'object_usage_linter.R' 'one_call_pipe_linter.R' 'outer_negation_linter.R' 'package_hooks_linter.R' 'paren_body_linter.R' 'paste_linter.R' 'path_utils.R' 'pipe_call_linter.R' 'pipe_consistency_linter.R' 'pipe_continuation_linter.R' 'pipe_return_linter.R' 'print_linter.R' 'quotes_linter.R' 'redundant_equals_linter.R' 'redundant_ifelse_linter.R' 'regex_subset_linter.R' 'rep_len_linter.R' 'repeat_linter.R' 'return_linter.R' 'routine_registration_linter.R' 'sample_int_linter.R' 'scalar_in_linter.R' 'semicolon_linter.R' 'seq_linter.R' 'settings.R' 'settings_utils.R' 'sort_linter.R' 'source_utils.R' 'spaces_inside_linter.R' 'spaces_left_parentheses_linter.R' 'sprintf_linter.R' 'stopifnot_all_linter.R' 'string_boundary_linter.R' 'strings_as_factors_linter.R' 'system_file_linter.R' 'terminal_close_linter.R' 'todo_comment_linter.R' 'trailing_blank_lines_linter.R' 'trailing_whitespace_linter.R' 'tree_utils.R' 'undesirable_function_linter.R' 'undesirable_operator_linter.R' 'unnecessary_concatenation_linter.R' 'unnecessary_lambda_linter.R' 'unnecessary_nesting_linter.R' 'unnecessary_placeholder_linter.R' 'unreachable_code_linter.R' 'unused_import_linter.R' 'use_lintr.R' 'vector_logic_linter.R' 'which_grepl_linter.R' 'whitespace_linter.R' 'with.R' 'with_id.R' 'xml_nodes_to_lints.R' 'xml_utils.R' 'yoda_test_linter.R' 'zzz.R'", + "Language": "en-US", + "NeedsCompilation": "no", + "Author": "Jim Hester [aut], Florent Angly [aut] (GitHub: fangly), Russ Hyde [aut], Michael Chirico [aut, cre] (ORCID: ), Kun Ren [aut], Alexander Rosenstock [aut] (GitHub: AshesITR), Indrajeet Patil [aut] (ORCID: ), Hugo Gruson [aut] (ORCID: )", + "Maintainer": "Michael Chirico ", + "Repository": "CRAN" + }, "litedown": { "Package": "litedown", "Version": "0.9", @@ -3866,7 +3938,7 @@ }, "magrittr": { "Package": "magrittr", - "Version": "2.0.4", + "Version": "2.0.5", "Source": "Repository", "Type": "Package", "Title": "A Forward-Pipe Operator for R", @@ -3957,8 +4029,7 @@ "URL": "https://github.com/HenrikBengtsson/matrixStats", "BugReports": "https://github.com/HenrikBengtsson/matrixStats/issues", "RoxygenNote": "7.3.2", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "memoise": { "Package": "memoise", @@ -4067,8 +4138,7 @@ "Maintainer": "Paul Gilbert ", "URL": "http://optimizer.r-forge.r-project.org/", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "oai": { "Package": "oai", @@ -4107,7 +4177,7 @@ }, "openssl": { "Package": "openssl", - "Version": "2.3.5", + "Version": "2.4.1", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -4138,6 +4208,42 @@ "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, + "otel": { + "Package": "otel", + "Version": "0.2.0", + "Source": "Repository", + "Title": "OpenTelemetry R API", + "Authors@R": "person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\"))", + "Description": "High-quality, ubiquitous, and portable telemetry to enable effective observability. OpenTelemetry is a collection of tools, APIs, and SDKs used to instrument, generate, collect, and export telemetry data (metrics, logs, and traces) for analysis in order to understand your software's performance and behavior. This package implements the OpenTelemetry API: . Use this package as a dependency if you want to instrument your R package for OpenTelemetry.", + "License": "MIT + file LICENSE", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.2.9000", + "Depends": [ + "R (>= 3.6.0)" + ], + "Suggests": [ + "callr", + "cli", + "glue", + "jsonlite", + "otelsdk", + "processx", + "shiny", + "spelling", + "testthat (>= 3.0.0)", + "utils", + "withr" + ], + "Config/Needs/website": "tidyverse/tidytemplate", + "Config/testthat/edition": "3", + "URL": "https://otel.r-lib.org, https://github.com/r-lib/otel", + "Additional_repositories": "https://github.com/r-lib/otelsdk/releases/download/devel", + "BugReports": "https://github.com/r-lib/otel/issues", + "NeedsCompilation": "no", + "Author": "Gábor Csárdi [aut, cre]", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, "outbreaks": { "Package": "outbreaks", "Version": "1.9.0", @@ -4165,6 +4271,63 @@ "Maintainer": "Finlay Campbell ", "Repository": "CRAN" }, + "pak": { + "Package": "pak", + "Version": "0.9.5", + "Source": "Repository", + "Title": "Another Approach to Package Installation", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Winston\", \"Chang\", role = \"ctb\", comment = \"R6, callr, processx\"), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\"), comment = \"callr, processx\"), person(\"Hadley\", \"Wickham\", role = c(\"ctb\", \"cph\"), comment = \"cli, curl, pkgbuild, yaml\"), person(\"Jeroen\", \"Ooms\", role = \"ctb\", comment = \"curl, jsonlite\"), person(\"Maëlle\", \"Salmon\", role = \"ctb\", comment = \"desc, pkgsearch\"), person(\"Duncan\", \"Temple Lang\", role = \"ctb\", comment = \"jsonlite\"), person(\"Lloyd\", \"Hilaiel\", role = \"cph\", comment = \"jsonlite\"), person(\"Alec\", \"Wong\", role = \"ctb\", comment = \"keyring\"), person(\"Michel Berkelaar and lpSolve authors\", role = \"ctb\", comment = \"lpSolve\"), person(\"R Consortium\", role = \"fnd\", comment = \"pkgsearch\"), person(\"Jay\", \"Loden\", role = \"ctb\", comment = \"ps\"), person(\"Dave\", \"Daeschler\", role = \"ctb\", comment = \"ps\"), person(\"Giampaolo\", \"Rodola\", role = \"ctb\", comment = \"ps\"), person(\"Shawn\", \"Garbett\", role = \"ctb\", comment = \"yaml\"), person(\"Jeremy\", \"Stephens\", role = \"ctb\", comment = \"yaml\"), person(\"Kirill\", \"Simonov\", role = \"ctb\", comment = \"yaml\"), person(\"Yihui\", \"Xie\", role = \"ctb\", comment = \"yaml\"), person(\"Zhuoer\", \"Dong\", role = \"ctb\", comment = \"yaml\"), person(\"Jeffrey\", \"Horner\", role = \"ctb\", comment = \"yaml\"), person(\"Will\", \"Beasley\", role = \"ctb\", comment = \"yaml\"), person(\"Brendan\", \"O'Connor\", role = \"ctb\", comment = \"yaml\"), person(\"Gregory\", \"Warnes\", role = \"ctb\", comment = \"yaml\"), person(\"Michael\", \"Quinn\", role = \"ctb\", comment = \"yaml\"), person(\"Zhian\", \"Kamvar\", role = \"ctb\", comment = \"yaml\"), person(\"Charlie\", \"Gao\", role = \"ctb\", comment = \"yaml\"), person(\"Kuba\", \"Podgórski\", role = \"ctb\", comment = \"zip\"), person(\"Rich\", \"Geldreich\", role = \"ctb\", comment = \"zip\") )", + "Description": "The goal of 'pak' is to make package installation faster and more reliable. In particular, it performs all HTTP operations in parallel, so metadata resolution and package downloads are fast. Metadata and package files are cached on the local disk as well. 'pak' has a dependency solver, so it finds version conflicts before performing the installation. This version of 'pak' supports CRAN, 'Bioconductor' and 'GitHub' packages as well.", + "License": "GPL-3", + "URL": "https://pak.r-lib.org/, https://github.com/r-lib/pak", + "BugReports": "https://github.com/r-lib/pak/issues", + "Depends": [ + "R (>= 3.5)" + ], + "Imports": [ + "tools", + "utils" + ], + "Suggests": [ + "callr (>= 3.7.0)", + "cli (>= 3.2.0)", + "covr", + "curl (>= 4.3.2)", + "desc (>= 1.4.1)", + "filelock (>= 1.0.2)", + "gitcreds", + "glue (>= 1.6.2)", + "jsonlite (>= 1.8.0)", + "keyring (>= 1.4.0)", + "pingr", + "pkgbuild (>= 1.4.2)", + "pkgcache (>= 2.2.4)", + "pkgdepends (>= 0.9.0)", + "pkgload", + "pkgsearch (>= 3.1.0)", + "processx (>= 3.8.1)", + "ps (>= 1.6.0)", + "rstudioapi", + "testthat (>= 3.2.0)", + "webfakes", + "withr", + "yaml" + ], + "Biarch": "true", + "ByteCompile": "true", + "Config/build/extra-sources": "configure*", + "Config/needs/dependencies": "callr, cli, curl, desc, filelock, jsonlite, keyring, lpSolve, pkgbuild, pkgcache, pkgdepends, pkgsearch, processx, ps, yaml", + "Config/Needs/website": "r-lib/asciicast, rmarkdown, roxygen2, tidyverse/tidytemplate", + "Config/Needs/deploy": "cli, curl, desc, gitcreds, glue@1.6.2, gaborcsardi/jsonlite, processx, R6@2.5.1", + "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-05-13", + "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", + "NeedsCompilation": "yes", + "Author": "Gábor Csárdi [aut, cre], Jim Hester [aut], Posit Software, PBC [cph, fnd] (ROR: ), Winston Chang [ctb] (R6, callr, processx), Ascent Digital Services [cph, fnd] (callr, processx), Hadley Wickham [ctb, cph] (cli, curl, pkgbuild, yaml), Jeroen Ooms [ctb] (curl, jsonlite), Maëlle Salmon [ctb] (desc, pkgsearch), Duncan Temple Lang [ctb] (jsonlite), Lloyd Hilaiel [cph] (jsonlite), Alec Wong [ctb] (keyring), Michel Berkelaar and lpSolve authors [ctb] (lpSolve), R Consortium [fnd] (pkgsearch), Jay Loden [ctb] (ps), Dave Daeschler [ctb] (ps), Giampaolo Rodola [ctb] (ps), Shawn Garbett [ctb] (yaml), Jeremy Stephens [ctb] (yaml), Kirill Simonov [ctb] (yaml), Yihui Xie [ctb] (yaml), Zhuoer Dong [ctb] (yaml), Jeffrey Horner [ctb] (yaml), Will Beasley [ctb] (yaml), Brendan O'Connor [ctb] (yaml), Gregory Warnes [ctb] (yaml), Michael Quinn [ctb] (yaml), Zhian Kamvar [ctb] (yaml), Charlie Gao [ctb] (yaml), Kuba Podgórski [ctb] (zip), Rich Geldreich [ctb] (zip)", + "Maintainer": "Gábor Csárdi ", + "Repository": "CRAN" + }, "patchwork": { "Package": "patchwork", "Version": "1.3.2", @@ -4368,12 +4531,12 @@ }, "posterior": { "Package": "posterior", - "Version": "1.6.1", + "Version": "1.7.0", "Source": "Repository", "Title": "Tools for Working with Posterior Distributions", - "Date": "2025-02-27", - "Authors@R": "c(person(\"Paul-Christian\", \"Bürkner\", email = \"paul.buerkner@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jonah\", \"Gabry\", email = \"jsg2201@columbia.edu\", role = c(\"aut\")), person(\"Matthew\", \"Kay\", email = \"mjskay@northwestern.edu\", role = c(\"aut\")), person(\"Aki\", \"Vehtari\", email = \"Aki.Vehtari@aalto.fi\", role = c(\"aut\")), person(\"Måns\", \"Magnusson\", role = c(\"ctb\")), person(\"Rok\", \"Češnovar\", role = c(\"ctb\")), person(\"Ben\", \"Lambert\", role = c(\"ctb\")), person(\"Ozan\", \"Adıgüzel\", role = c(\"ctb\")), person(\"Jacob\", \"Socolar\", role = c(\"ctb\")), person(\"Noa\", \"Kallioinen\", role = c(\"ctb\")))", - "Description": "Provides useful tools for both users and developers of packages for fitting Bayesian models or working with output from Bayesian models. The primary goals of the package are to: (a) Efficiently convert between many different useful formats of draws (samples) from posterior or prior distributions. (b) Provide consistent methods for operations commonly performed on draws, for example, subsetting, binding, or mutating draws. (c) Provide various summaries of draws in convenient formats. (d) Provide lightweight implementations of state of the art posterior inference diagnostics. References: Vehtari et al. (2021) .", + "Date": "2026-04-01", + "Authors@R": "c(person(\"Paul-Christian\", \"Bürkner\", email = \"paul.buerkner@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Jonah\", \"Gabry\", email = \"jgabry@gmail.com\", role = c(\"aut\")), person(\"Matthew\", \"Kay\", email = \"mjskay@northwestern.edu\", role = c(\"aut\")), person(\"Aki\", \"Vehtari\", email = \"Aki.Vehtari@aalto.fi\", role = c(\"aut\")), person(\"Måns\", \"Magnusson\", role = c(\"ctb\")), person(\"Rok\", \"Češnovar\", role = c(\"ctb\")), person(\"Ben\", \"Lambert\", role = c(\"ctb\")), person(\"Ozan\", \"Adıgüzel\", role = c(\"ctb\")), person(\"Jacob\", \"Socolar\", role = c(\"ctb\")), person(\"Noa\", \"Kallioinen\", role = c(\"ctb\")), person(\"Teemu\", \"Säilynoja\", role = c(\"ctb\")))", + "Description": "Provides useful tools for both users and developers of packages for fitting Bayesian models or working with output from Bayesian models. The primary goals of the package are to: (a) Efficiently convert between many different useful formats of draws (samples) from posterior or prior distributions. (b) Provide consistent methods for operations commonly performed on draws, for example, subsetting, binding, or mutating draws. (c) Provide various summaries of draws in convenient formats. (d) Provide lightweight implementations of state of the art posterior inference diagnostics. References: Vehtari et al. (2021) .", "Depends": [ "R (>= 3.2.0)" ], @@ -4404,48 +4567,18 @@ "ggdist", "rmarkdown" ], + "Config/Needs/website": "stan-dev/pkgdown-config", "License": "BSD_3_clause + file LICENSE", "Encoding": "UTF-8", "URL": "https://mc-stan.org/posterior/, https://discourse.mc-stan.org/", "BugReports": "https://github.com/stan-dev/posterior/issues", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "NeedsCompilation": "no", - "Author": "Paul-Christian Bürkner [aut, cre], Jonah Gabry [aut], Matthew Kay [aut], Aki Vehtari [aut], Måns Magnusson [ctb], Rok Češnovar [ctb], Ben Lambert [ctb], Ozan Adıgüzel [ctb], Jacob Socolar [ctb], Noa Kallioinen [ctb]", + "Author": "Paul-Christian Bürkner [aut, cre], Jonah Gabry [aut], Matthew Kay [aut], Aki Vehtari [aut], Måns Magnusson [ctb], Rok Češnovar [ctb], Ben Lambert [ctb], Ozan Adıgüzel [ctb], Jacob Socolar [ctb], Noa Kallioinen [ctb], Teemu Säilynoja [ctb]", "Maintainer": "Paul-Christian Bürkner ", "Repository": "CRAN" }, - "pracma": { - "Package": "pracma", - "Version": "2.4.6", - "Source": "Repository", - "Type": "Package", - "Date": "2025-10-20", - "Title": "Practical Numerical Math Functions", - "Authors@R": "person(\"Hans W.\", \"Borchers\", email=\"hwborchers@googlemail.com\", role=c(\"aut\", \"cre\"))", - "Depends": [ - "R (>= 3.1.0)" - ], - "Imports": [ - "graphics", - "grDevices", - "stats", - "utils" - ], - "Suggests": [ - "NlcOptim", - "quadprog" - ], - "Description": "Provides a large number of functions from numerical analysis and linear algebra, numerical optimization, differential equations, time series, plus some well-known special mathematical functions. Uses 'MATLAB' function names where appropriate to simplify porting.", - "License": "GPL (>= 3)", - "ByteCompile": "true", - "LazyData": "yes", - "NeedsCompilation": "no", - "Author": "Hans W. Borchers [aut, cre]", - "Maintainer": "Hans W. Borchers ", - "Repository": "CRAN", - "Encoding": "UTF-8" - }, "prettyunits": { "Package": "prettyunits", "Version": "1.2.0", @@ -4473,7 +4606,7 @@ }, "primarycensored": { "Package": "primarycensored", - "Version": "1.3.0", + "Version": "1.5.0", "Source": "Repository", "Title": "Primary Event Censored Distributions", "Authors@R": "c(person(given = \"Sam\", family = \"Abbott\", role = c(\"aut\", \"cre\", \"cph\"), email = \"contact@samabbott.co.uk\", comment = c(ORCID = \"0000-0001-8057-8037\")), person(given = \"Sam\", family = \"Brand\", role = c(\"aut\"), email = \"usi1@cdc.gov\", comment = c(ORCID = \"0000-0003-0645-5367\")), person(given = \"Adam\", family = \"Howes\", role = c(\"ctb\"), email = \"adamthowes@gmail.com\", comment = c(ORCID = \"0000-0003-2386-4031\")), person(given = \"James Mba\", family = \"Azam\", role = c(\"aut\"), email = \"james.azam@lshtm.ac.uk\", comment = c(ORCID = \"0000-0001-5782-7330\")), person(given = \"Carl\", family = \"Pearson\", role = c(\"aut\"), email = \"carl.ab.pearson@gmail.com\", comment = c(ORCID = \"0000-0003-0701-7860\")), person(given = \"Sebastian\", family = \"Funk\", role = c(\"aut\"), email = \"sebastian.funk@lshtm.ac.uk\", comment = c(ORCID = \"0000-0002-2842-3406\")), person(given = \"Kelly\", family = \"Charniga\", role = c(\"aut\"), email = \" kelly.charniga@gmail.com\", comment = c(ORCID = \"0000-0002-7648-7041\")))", @@ -4484,11 +4617,6 @@ "Depends": [ "R (>= 4.0.0)" ], - "Imports": [ - "lifecycle", - "pracma", - "rlang" - ], "Suggests": [ "bookdown", "cmdstanr", @@ -4509,7 +4637,7 @@ "Encoding": "UTF-8", "Language": "en-GB", "LazyData": "true", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Author": "Sam Abbott [aut, cre, cph] (ORCID: ), Sam Brand [aut] (ORCID: ), Adam Howes [ctb] (ORCID: ), James Mba Azam [aut] (ORCID: ), Carl Pearson [aut] (ORCID: ), Sebastian Funk [aut] (ORCID: ), Kelly Charniga [aut] (ORCID: )", @@ -4518,10 +4646,10 @@ }, "processx": { "Package": "processx", - "Version": "3.8.6", + "Version": "3.9.0", "Source": "Repository", "Title": "Execute and Control System Processes", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", "Description": "Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.", "License": "MIT + file LICENSE", "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx", @@ -4530,7 +4658,7 @@ "R (>= 3.4.0)" ], "Imports": [ - "ps (>= 1.2.0)", + "ps (>= 1.9.3)", "R6", "utils" ], @@ -4549,10 +4677,11 @@ ], "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1.9000", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", + "Author": "Gábor Csárdi [aut, cre, cph] (ORCID: ), Winston Chang [aut], Posit Software, PBC [cph, fnd] (ROR: ), Ascent Digital Services [cph, fnd]", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, @@ -4591,10 +4720,10 @@ }, "ps": { "Package": "ps", - "Version": "1.9.1", + "Version": "1.9.3", "Source": "Repository", "Title": "List, Query, Manipulate System Processes", - "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jay\", \"Loden\", role = \"aut\"), person(\"Dave\", \"Daeschler\", role = \"aut\"), person(\"Giampaolo\", \"Rodola'\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "List, query and manipulate all system processes, on 'Windows', 'Linux' and 'macOS'.", "License": "MIT + file LICENSE", "URL": "https://github.com/r-lib/ps, https://ps.r-lib.org/", @@ -4621,16 +4750,17 @@ "Biarch": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-28", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd]", + "Author": "Jay Loden [aut], Dave Daeschler [aut], Giampaolo Rodola' [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", "Maintainer": "Gábor Csárdi ", "Repository": "CRAN" }, "purrr": { "Package": "purrr", - "Version": "1.2.1", + "Version": "1.2.2", "Source": "Repository", "Title": "Functional Programming Tools", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"https://ror.org/03wc8by49\")) )", @@ -4679,7 +4809,7 @@ }, "ragg": { "Package": "ragg", - "Version": "1.5.0", + "Version": "1.5.2", "Source": "Repository", "Type": "Package", "Title": "Graphic Devices Based on AGG", @@ -4708,7 +4838,7 @@ "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", @@ -4881,16 +5011,16 @@ }, "readxl": { "Package": "readxl", - "Version": "1.4.5", + "Version": "1.5.0", "Source": "Repository", "Title": "Read Excel Files", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\"), comment = \"Copyright holder of all R code and all C/C++ code without explicit copyright attribution\"), person(\"Marcin\", \"Kalicinski\", role = c(\"ctb\", \"cph\"), comment = \"Author of included RapidXML code\"), person(\"Komarov Valery\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"Christophe Leitienne\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"Bob Colbert\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"David Hoerl\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\"), person(\"Evan Miller\", role = c(\"ctb\", \"cph\"), comment = \"Author of included libxls code\") )", - "Description": "Import excel files into R. Supports '.xls' via the embedded 'libxls' C library and '.xlsx' via the embedded 'RapidXML' C++ library . Works on Windows, Mac and Linux without external dependencies.", + "Description": "Import excel files into R. Supports '.xls' via the embedded 'libxls' C library and '.xlsx' via the embedded 'RapidXML' C++ library . Works on Windows, Mac and Linux without external dependencies.", "License": "MIT + file LICENSE", "URL": "https://readxl.tidyverse.org, https://github.com/tidyverse/readxl", "BugReports": "https://github.com/tidyverse/readxl/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "cellranger", @@ -4905,17 +5035,18 @@ "withr" ], "LinkingTo": [ - "cpp11 (>= 0.4.0)", + "cpp11 (>= 0.5.5)", "progress" ], "VignetteBuilder": "knitr", + "Config/build/compilation-database": "true", "Config/Needs/website": "tidyverse/tidytemplate, tidyverse", + "Config/roxygen2/version": "8.0.0", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Note": "libxls v1.6.3 c199d13", - "RoxygenNote": "7.3.2", "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut] (), Jennifer Bryan [aut, cre] (), Posit, PBC [cph, fnd] (Copyright holder of all R code and all C/C++ code without explicit copyright attribution), Marcin Kalicinski [ctb, cph] (Author of included RapidXML code), Komarov Valery [ctb, cph] (Author of included libxls code), Christophe Leitienne [ctb, cph] (Author of included libxls code), Bob Colbert [ctb, cph] (Author of included libxls code), David Hoerl [ctb, cph] (Author of included libxls code), Evan Miller [ctb, cph] (Author of included libxls code)", + "Author": "Hadley Wickham [aut] (ORCID: ), Jennifer Bryan [aut, cre] (ORCID: ), Posit, PBC [cph, fnd] (Copyright holder of all R code and all C/C++ code without explicit copyright attribution), Marcin Kalicinski [ctb, cph] (Author of included RapidXML code), Komarov Valery [ctb, cph] (Author of included libxls code), Christophe Leitienne [ctb, cph] (Author of included libxls code), Bob Colbert [ctb, cph] (Author of included libxls code), David Hoerl [ctb, cph] (Author of included libxls code), Evan Miller [ctb, cph] (Author of included libxls code)", "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, @@ -4966,7 +5097,7 @@ }, "renv": { "Package": "renv", - "Version": "1.1.7", + "Version": "1.2.3", "Source": "Repository", "Type": "Package", "Title": "Project Environments", @@ -5071,9 +5202,46 @@ "Maintainer": "Jennifer Bryan ", "Repository": "CRAN" }, + "rex": { + "Package": "rex", + "Version": "1.2.2", + "Source": "Repository", + "Type": "Package", + "Title": "Friendly Regular Expressions", + "Authors@R": "c( person(\"Kevin\", \"Ushey\", , \"kevin@rstudio.com\", role = c(\"aut\", \"cre\")), person(\"Jim\", \"Hester\", , \"james.f.hester@gmail.com\", role = \"aut\"), person(\"Robert\", \"Krzyzanowski\", , \"rkrzyzanowski@gmail.com\", role = \"aut\") )", + "Description": "A friendly interface for the construction of regular expressions.", + "License": "MIT + file LICENSE", + "URL": "https://rex.r-lib.org, https://github.com/r-lib/rex", + "BugReports": "https://github.com/r-lib/rex/issues", + "Suggests": [ + "covr", + "dplyr", + "ggplot2", + "Hmisc", + "knitr", + "magrittr", + "rmarkdown", + "roxygen2", + "rvest", + "stringr", + "testthat" + ], + "VignetteBuilder": "knitr", + "Encoding": "UTF-8", + "RoxygenNote": "7.1.2", + "Collate": "'aaa.R' 'utils.R' 'escape.R' 'capture.R' 'character_class.R' 'counts.R' 'lookarounds.R' 'match.R' 'or.R' 'rex-mode.R' 'rex.R' 'shortcuts.R' 'wildcards.R' 'zzz.R'", + "Config/Needs/website": "r-lib/pkgdown, tidyverse/tidytemplate", + "Imports": [ + "withr" + ], + "NeedsCompilation": "no", + "Author": "Kevin Ushey [aut, cre], Jim Hester [aut], Robert Krzyzanowski [aut]", + "Maintainer": "Kevin Ushey ", + "Repository": "CRAN" + }, "rlang": { "Package": "rlang", - "Version": "1.1.7", + "Version": "1.2.0", "Source": "Repository", "Title": "Functions for Base Types and Core R and 'Tidyverse' Features", "Description": "A toolbox for working with base types, core R features like the condition system, and core 'Tidyverse' features like tidy evaluation.", @@ -5101,7 +5269,7 @@ "pkgload", "rmarkdown", "stats", - "testthat (>= 3.2.0)", + "testthat (>= 3.3.2)", "tibble", "usethis", "vctrs (>= 0.2.3)", @@ -5124,7 +5292,7 @@ }, "rmarkdown": { "Package": "rmarkdown", - "Version": "2.30", + "Version": "2.31", "Source": "Repository", "Type": "Package", "Title": "Dynamic Documents for R", @@ -5171,7 +5339,7 @@ "Config/Needs/website": "rstudio/quillt, pkgdown", "Config/testthat/edition": "3", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "pandoc (>= 1.14) - http://pandoc.org", "NeedsCompilation": "no", "Author": "JJ Allaire [aut], Yihui Xie [aut, cre] (ORCID: ), Christophe Dervieux [aut] (ORCID: ), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (ORCID: ), Andrew Dunning [ctb] (ORCID: ), Atsushi Yasumoto [ctb, cph] (ORCID: , cph: Number sections Lua filter), Barret Schloerke [ctb], Carson Sievert [ctb] (ORCID: ), Devon Ryan [ctb] (ORCID: ), Frederik Aust [ctb] (ORCID: ), Jeff Allen [ctb], JooYoung Seo [ctb] (ORCID: ), Malcolm Barrett [ctb], Rob Hyndman [ctb], Romain Lesur [ctb], Roy Storey [ctb], Ruben Arslan [ctb], Sergio Oller [ctb], Posit Software, PBC [cph, fnd], jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui/AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs), Benct Philip Jonsson [ctb, cph] (pagebreak Lua filter), Albert Krewinkel [ctb, cph] (pagebreak Lua filter)", @@ -5496,19 +5664,18 @@ "NeedsCompilation": "no", "Author": "Simon Potter [aut, trl, cre], Simon Sapin [aut], Ian Bicking [aut]", "Maintainer": "Simon Potter ", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "socialmixr": { "Package": "socialmixr", - "Version": "0.5.1", + "Version": "0.6.0", "Source": "Repository", "Title": "Social Mixing Matrices for Infectious Disease Modelling", "Authors@R": "c( person(\"Sebastian\", \"Funk\", , \"sebastian.funk@lshtm.ac.uk\", role = c(\"aut\", \"cre\")), person(\"Lander\", \"Willem\", role = \"aut\"), person(\"Hugo\", \"Gruson\", role = \"aut\"), person(\"Nicholas\", \"Tierney\", , \"nicholas.tierney@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-1460-8722\")), person(\"Maria\", \"Bekker-Nielsen Dunbar\", role = \"ctb\"), person(\"Carl A. B.\", \"Pearson\", role = \"ctb\"), person(\"Sam\", \"Clifford\", , \"sj.clifford@gmail.com\", role = \"ctb\"), person(\"Christopher\", \"Jarvis\", role = \"ctb\"), person(\"Alexis\", \"Robert\", , \"alexis.robert@lshtm.ac.uk\", role = \"ctb\"), person(\"Niel\", \"Hens\", role = \"ctb\"), person(\"Pietro\", \"Coletti\", role = c(\"col\", \"dtm\")), person(\"Lloyd\", \"Chapman\", , \"l.chapman4@lancaster.ac.uk\", role = \"ctb\") )", - "Description": "Provides methods for sampling contact matrices from diary data for use in infectious disease modelling, as discussed in Mossong et al. (2008) .", + "Description": "Methods for sampling contact matrices from diary data for use in infectious disease modelling, as discussed in Mossong et al. (2008) .", "License": "MIT + file LICENSE", "Depends": [ - "R (>= 3.5.0)" + "R (>= 4.1.0)" ], "Imports": [ "checkmate", @@ -5723,7 +5890,7 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", @@ -5785,12 +5952,11 @@ "License": "GPL (>= 2)", "URL": "http://www.stat.boogaart.de/tensorA/", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "textshaping": { "Package": "textshaping", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -6122,7 +6288,7 @@ }, "tinytex": { "Package": "tinytex", - "Version": "0.58", + "Version": "0.59", "Source": "Repository", "Type": "Package", "Title": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents", @@ -6244,12 +6410,11 @@ "URL": "https://www.rforge.net/uuid", "BugReports": "https://github.com/s-u/uuid/issues", "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "vctrs": { "Package": "vctrs", - "Version": "0.7.1", + "Version": "0.7.3", "Source": "Repository", "Title": "Vector Helpers", "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = \"aut\"), person(\"Davis\", \"Vaughan\", , \"davis@posit.co\", role = c(\"aut\", \"cre\")), person(\"data.table team\", role = \"cph\", comment = \"Radix sort based on data.table's forder() and their contribution to R's order()\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", @@ -6289,6 +6454,7 @@ "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Encoding": "UTF-8", + "KeepSource": "true", "Language": "en-GB", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", @@ -6371,7 +6537,7 @@ }, "vroom": { "Package": "vroom", - "Version": "1.7.0", + "Version": "1.7.1", "Source": "Repository", "Title": "Read and Write Rectangular Text Data Quickly", "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -6531,12 +6697,11 @@ "License": "GPL (>= 2)", "URL": "http://population.un.org/wpp", "NeedsCompilation": "no", - "Repository": "CRAN", - "Encoding": "UTF-8" + "Repository": "CRAN" }, "xfun": { "Package": "xfun", - "Version": "0.56", + "Version": "0.58", "Source": "Repository", "Type": "Package", "Title": "Supporting Functions for Packages Maintained by 'Yihui Xie'", @@ -6575,8 +6740,8 @@ "URL": "https://github.com/yihui/xfun", "BugReports": "https://github.com/yihui/xfun/issues", "Encoding": "UTF-8", - "RoxygenNote": "7.3.3", "VignetteBuilder": "litedown", + "Config/roxygen2/version": "8.0.0", "NeedsCompilation": "yes", "Author": "Yihui Xie [aut, cre, cph] (ORCID: , URL: https://yihui.org), Wush Wu [ctb], Daijiang Li [ctb], Xianying Tan [ctb], Salim Brüggemann [ctb] (ORCID: ), Christophe Dervieux [ctb]", "Maintainer": "Yihui Xie ", @@ -6622,6 +6787,31 @@ "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, + "xmlparsedata": { + "Package": "xmlparsedata", + "Version": "1.0.5", + "Source": "Repository", + "Title": "Parse Data of 'R' Code as an 'XML' Tree", + "Author": "Gábor Csárdi", + "Maintainer": "Gábor Csárdi ", + "Description": "Convert the output of 'utils::getParseData()' to an 'XML' tree, that one can search via 'XPath', and easier to manipulate in general.", + "License": "MIT + file LICENSE", + "LazyData": "true", + "URL": "https://github.com/r-lib/xmlparsedata#readme", + "BugReports": "https://github.com/r-lib/xmlparsedata/issues", + "RoxygenNote": "6.0.1", + "Suggests": [ + "covr", + "testthat", + "xml2" + ], + "Depends": [ + "R (>= 3.0.0)" + ], + "Encoding": "UTF-8", + "NeedsCompilation": "no", + "Repository": "CRAN" + }, "yaml": { "Package": "yaml", "Version": "2.3.12",