beta-stability/pyproject.toml at main · Imageomics/beta-stability · GitHub

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[build-system]
requires = ["hatchling>=1.24"]
build-backend = "hatchling.build"

[project]
name = "beta_stability"
version = "0.1.0"
description = "Beta Stability — stability-driven clustering with active review for wildlife re-identification."
readme = "README.md"
license = { file = "LICENSE" }
requires-python = ">=3.11"
dependencies = [
    "typing-extensions",
    "h5py",
    "hdbscan",
    "matplotlib",
    "networkx",
    "numpy",
    "omegaconf",
    "opencv-python-headless",
    "pandas",
    "pillow",
    "pyyaml",
    "scikit-learn",
    "scipy",
    "tqdm",
]

[project.optional-dependencies]
dev = [
    "pytest",
    "ruff",
    "pytest-cov",
    "pytest-subprocess",
    "coverage",
    "codecov",
    "xdoctest",
    "brunette",
]
docs = [
    "sphinx",
    "sphinx-rtd-theme",
]
# Only scripts/reproduce_gzcd.py needs these: the package itself consumes
# embeddings that were computed elsewhere.
embeddings = [
    "huggingface-hub",
    "torch",
    # The model's remote code targets the 4.x API: transformers 5 renamed
    # _tied_weights_keys, which MiewIdNet relies on.
    "transformers>=4.40,<5",
    "albumentations",
    "timm",
]

[project.scripts]
beta_stability-cluster = "beta_stability.run:main"

[tool.hatch.build.targets.wheel]
packages = ["beta_stability"]

[tool.hatch.build.targets.sdist]
include = [
    "beta_stability",
    "README.rst",
    "LICENSE",
    "pyproject.toml",
]

[tool.uv]
package = true

[tool.ruff]
# Experiment code is not held to the package's standard.
extend-exclude = ["beta_stability/exploratory", "internal"]

[tool.ruff.lint.per-file-ignores]
# These hold families of functions that share one signature so a registry or an
# interface can call them uniformly, which means each one leaves some of its
# parameters unused.
"beta_stability/metrics/cluster_validator.py" = ["ARG001"]
"beta_stability/metrics/cluster_metrics.py" = ["ARG001"]

[tool.ruff.lint]
select = ["F", "E", "W", "B", "C4", "SIM", "RET", "ARG", "PIE", "PERF", "RUF"]
ignore = [
    "E501",             # line length: brunette owns wrapping
    "RUF001",           # mathematical symbols in strings, docstrings and
    "RUF002",           # comments are deliberate: beta, sigma, union
    "RUF003",
]